CK739694

Overview
NameCK739694
Unique NameCK739694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length397
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:631..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739694 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.088e-33
Identity = 71/85 (83.53%), Postives = 73/85 (85.88%), Query Frame = 2
Query:    5 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 256
            +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  181 VGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of CK739694 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.173e-32
Identity = 70/85 (82.35%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 256
            +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of CK739694 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.774e-31
Identity = 69/85 (81.18%), Postives = 73/85 (85.88%), Query Frame = 2
Query:    2 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 256
            PLGEVTDPLYPG SFD LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  184 PLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of CK739694 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.438e-31
Identity = 63/79 (79.75%), Postives = 67/79 (84.81%), Query Frame = 2
Query:   20 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 256
            D LYPGG FDPLGLADDP+ FAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  174 DTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of CK739694 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.469e-24
Identity = 55/83 (66.27%), Postives = 60/83 (72.29%), Query Frame = 2
Query:    8 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 253
            GE  D LYPGG FDPLGLADDP+ F ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:   39 GEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of CK739694 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.698e-23
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 2
Query:   20 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 223
            D L+PGG FDPLGLA DPE  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  198 DKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CK739694 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.040e-21
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 2
Query:    5 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 223
            LG   DP YPGG  F+PLG   D ++  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  192 LGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CK739694 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.653e-19
Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 2
Query:   20 DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 223
            +P YPGG F +PLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  199 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of CK739694 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.250e-18
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 2
Query:   29 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 223
            YPGG+FDPLG + DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  167 YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of CK739694 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.250e-18
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 2
Query:   29 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 223
            YPGG+FDPLG + DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:  168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
The following BLAST results are available for this feature:
BLAST of CK739694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB23_SOLLC3.088e-3383.53Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU1.173e-3282.35Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_MALDO3.774e-3181.18Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNTE6.438e-3179.75Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_EUGGR4.469e-2466.27Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB26_ARATH1.698e-2375.00Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB13_SOLLC6.040e-2163.51Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA5.653e-1959.42Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU6.250e-1866.67Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC6.250e-1866.67Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6081 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739694 ID=CK739694; Name=CK739694; organism=Citrus sinensis; type=EST; length=397bp
GCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATC
CATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAG
GAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGT
TCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACT
TGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTC
CCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTT
GGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTG
TGATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAAA
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