CK739695
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 266.159 bits (679), Expect = 6.823e-71 Identity = 125/138 (90.58%), Postives = 129/138 (93.48%), Query Frame = 3 Query: 3 LGLGNWVHAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP 416 LGLGNWV AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKD EKKKYPGGAFDPLG+SKDP KFEE KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHNNIGDVIIP+GI P Sbjct: 108 LGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVIIPKGIFP 245
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 1.681e-69 Identity = 120/136 (88.24%), Postives = 127/136 (93.38%), Query Frame = 3 Query: 3 LGLGNWVHAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGI 410 LGLGNWV AQEWAA+P GQATYLGNPVPWG LPTIL IEFL+IAF E QR+MEKDPEKKKYPGGAFDPLGFSKDP KFEE K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++IPR I Sbjct: 107 LGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPRNI 242
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 8.173e-24 Identity = 60/125 (48.00%), Postives = 84/125 (67.20%), Query Frame = 3 Query: 18 WVHAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 389 W A + V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP+K + ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D Sbjct: 165 WQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 6.919e-23 Identity = 59/125 (47.20%), Postives = 82/125 (65.60%), Query Frame = 3 Query: 18 WVHAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 389 W A + V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP K + ++ EIK+ RLA++ F+GF VQ +A G GPL N ATHL+DP H I D Sbjct: 162 WQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 282
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.443e-20 Identity = 52/112 (46.43%), Postives = 77/112 (68.75%), Query Frame = 3 Query: 18 WVHAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 353 W A + V G ++YLG P+P+ +L T++ IE L + ++E QR+ E DPEK+ YPGG FDPLG + DP+K + K+ EIK+ RLA++AF+ F + Q+A+ G GP+ LAT Sbjct: 166 WQDAGKVELVEG--SSYLGQPLPF-SLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFAL-QAAFTGKGPVSFLAT 273
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.553e-19 Identity = 56/115 (48.70%), Postives = 69/115 (60.00%), Query Frame = 3 Query: 54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380 G YLGNP V ++ I + + + VE R + P E YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 141 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 254
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.350e-18 Identity = 54/115 (46.96%), Postives = 68/115 (59.13%), Query Frame = 3 Query: 54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380 G YLGNP V ++ I + + + VE R P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENLA HLADP +NN Sbjct: 142 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 255
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.350e-18 Identity = 54/115 (46.96%), Postives = 68/115 (59.13%), Query Frame = 3 Query: 54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380 G YLGNP V ++ I + + + VE R P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENLA HLADP +NN Sbjct: 142 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 255
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 3.008e-18 Identity = 56/117 (47.86%), Postives = 69/117 (58.97%), Query Frame = 3 Query: 54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380 G YLGNP + ++ I ++ + + VE R DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 141 GGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.929e-18 Identity = 53/116 (45.69%), Postives = 70/116 (60.34%), Query Frame = 3 Query: 51 GGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 395 G Y G +P L +V E + + E+ R D E K +PGG FDPLG +KDP++ KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+DP+ NN+ VI Sbjct: 157 GNTLNYFGKNIPIN-LVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLAKHLSDPFGNNLLTVI 270 The following BLAST results are available for this feature:
BLAST of CK739695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739695 ID=CK739695; Name=CK739695; organism=Citrus sinensis; type=EST; length=524bpback to top |