CK739695

Overview
NameCK739695
Unique NameCK739695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10040 contig Csv1_Contig10040:346..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.264e-16
Identity = 54/126 (42.86%), Postives = 67/126 (53.17%), Query Frame = 3
Query:    3 LGLGNWVHAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            LG  N +HAQ   AV   Q   +G            +IE   +        ++K      YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:  146 LGNPNLIHAQSILAVWASQVVLMG------------LIEGYRVGGGPLGEGLDKI-----YPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLFDHVADPVANN 253          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.264e-16
Identity = 53/117 (45.30%), Postives = 67/117 (57.26%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  +   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP+   E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  132 GGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 244          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.264e-16
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  183 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            YPGG+FDPLG + DP+ F E KVKE+K GRLA+L+  GF V Q+   G GPLENLA H+ADP +NN
Sbjct:  189 YPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 253          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.264e-16
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG + D + F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  140 GGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 252          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.651e-16
Identity = 52/115 (45.22%), Postives = 66/115 (57.39%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  +    +   L ++ + +  VE  R +   P  +     YPG AFDPLG + DP  F E KVKEIKNGRLA+ A +GF V Q+   G GP+ENL  HLA+P  NN
Sbjct:  150 GGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR-VNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFV-QAIVTGKGPIENLTDHLANPAENN 262          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.651e-16
Identity = 53/117 (45.30%), Postives = 67/117 (57.26%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  +   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HLA P +NN
Sbjct:  139 GGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLAGPVNNN 251          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.651e-16
Identity = 55/129 (42.64%), Postives = 69/129 (53.49%), Query Frame = 3
Query:   18 WVHAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            W  A       GG   YLGNP  +   ++  I   + + + FVE  R          DP    YPGGAFDPLG + DP  F E KVKE+KNGRLA+ +  GF V Q+   G GP++NL  H+ADP  NN
Sbjct:  130 WFKAGSQIFAEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIQNLYDHVADPVANN 253          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.816e-16
Identity = 55/117 (47.01%), Postives = 65/117 (55.56%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP  F E KVKEIKNGRLA+ +  GF V Q+   G GPLENL  HLADP  NN
Sbjct:  144 GGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLNDHLADPVANN 256          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.816e-16
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  183 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            YPGG FDPLG + DP  F + KVKEIKNGRLA+ +  GF V Q+   G GP+ENLA HLADP +NN
Sbjct:  202 YPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 266          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.816e-16
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  183 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            YPGG+FDPL  + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLA+P +NN
Sbjct:  169 YPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLAEPVNNN 233          
The following BLAST results are available for this feature:
BLAST of CK739695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB23_TOBAC1.264e-1642.86Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB22_SOYBN1.264e-1645.30Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_MAIZE1.264e-1662.12Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_HORVU1.264e-1647.01Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_DUNSA1.651e-1645.22Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOYBN1.651e-1645.30Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB215_PEA1.651e-1642.64Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_PHYPA2.816e-1647.01Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PYRPY2.816e-1662.12Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_SOYBN2.816e-1662.12Chlorophyll a-b binding protein, chloroplastic (Fr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6082 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739695 ID=CK739695; Name=CK739695; organism=Citrus sinensis; type=EST; length=524bp
CATTGGGATTGGGCAACTGGGTGCATGCGCAAGAGTGGGCAGCAGTTCCT
GGAGGACAAGCCACATACTTAGGCAACCCTGTTCCATGGGGCACTCTCCC
CACAATTTTGGTGATTGAATTCCTTTCCATTGCCTTCGTTGAGCACCAAC
GCAGCATGGAGAAAGACCCCGAGAAGAAGAAGTACCCCGGTGGTGCTTTC
GACCCCTTGGGCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGT
CAAGGAGATAAAAAATGGGCGTTTGGCATTGTTGGCATTTGTGGGTTTCT
GCGTGCAACAATCAGCATATCCGGGCACAGGACCATTGGAGAACTTGGCA
ACTCACTTGGCTGATCCATGGCACAACAACATTGGGGACGTTATTATCCC
CAGAGGGATTGTGCCTTGAAGAACTGCATTGTTAAATTATCCAGTCCACT
GTAAAATTCCCTGTTAAAAGAGCCTTTAATGAAACAGAATTCGTATCTTT
CTGACTGTAAAAAAAAAAAAAAAA
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