CK739695

Overview
NameCK739695
Unique NameCK739695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10040 contig Csv1_Contig10040:346..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.057e-15
Identity = 51/117 (43.59%), Postives = 64/117 (54.70%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  +   ++  I   + + +  +E  R          DP    YPG AFDPLG + DP+   E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL  HLADP  NN
Sbjct:   26 GGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHLADPVANN 138          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.057e-15
Identity = 40/65 (61.54%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  186 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            PGGAFDPLG + DP+   E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL  HLADP  NN
Sbjct:  191 PGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHLADPVANN 254          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.668e-14
Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 3
Query:   93 TLPTILVIEFLSIAFVEHQRSMEKDPEK------KKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            +L  IL  + L +  VE  R+    P +      + YPGG FDPLG + DP  F E KVKEIKNGRLA+   +GF   Q+   G GP+EN   HL DP  +N
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGF-YAQAIVTGEGPVENWLYHLQDPSAHN 110          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.001e-13
Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  V    +     ++ + +  +E  R +   P  +     YPG +FDPLG + DP  F E KVKEIKNGRLA  +  GF V Q+   G GP++NL  HLA+P  NN
Sbjct:  129 GGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR-VNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFV-QAIVTGKGPVQNLDDHLANPTVNN 241          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.231e-13
Identity = 51/115 (44.35%), Postives = 62/115 (53.91%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  V   ++  +L  + + +  VE  R             YPGG  FDPLG + DP  F E KVKEIKNGRLA+ +  GF V Q+   G GPLENL  HL +P  NN
Sbjct:  140 GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 253          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.491e-13
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  183 YPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 404
            YPGG  FDPLG+ S  P K +E + KEIKNGRLA+LA +G   Q   Y GTGP++NL  HLADP H  I     P+
Sbjct:  196 YPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATIFAAFSPK 270          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.491e-13
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  183 YPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 404
            YPGG  FDPLG+ S  P K +E + KEIKNGRLA+LA +G   Q   Y GTGP++NL  HLADP H  I     P+
Sbjct:  196 YPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATIFAAFSPK 270          
The following BLAST results are available for this feature:
BLAST of CK739695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB22_PINSY9.057e-1543.59Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_PINTH9.057e-1561.54Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_EUGGR7.668e-1444.12Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_CHLRE1.001e-1341.74Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC2.231e-1344.35Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB12_SOLLC6.491e-1353.95Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY6.491e-1353.95Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6082 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739695 ID=CK739695; Name=CK739695; organism=Citrus sinensis; type=EST; length=524bp
CATTGGGATTGGGCAACTGGGTGCATGCGCAAGAGTGGGCAGCAGTTCCT
GGAGGACAAGCCACATACTTAGGCAACCCTGTTCCATGGGGCACTCTCCC
CACAATTTTGGTGATTGAATTCCTTTCCATTGCCTTCGTTGAGCACCAAC
GCAGCATGGAGAAAGACCCCGAGAAGAAGAAGTACCCCGGTGGTGCTTTC
GACCCCTTGGGCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGT
CAAGGAGATAAAAAATGGGCGTTTGGCATTGTTGGCATTTGTGGGTTTCT
GCGTGCAACAATCAGCATATCCGGGCACAGGACCATTGGAGAACTTGGCA
ACTCACTTGGCTGATCCATGGCACAACAACATTGGGGACGTTATTATCCC
CAGAGGGATTGTGCCTTGAAGAACTGCATTGTTAAATTATCCAGTCCACT
GTAAAATTCCCTGTTAAAAGAGCCTTTAATGAAACAGAATTCGTATCTTT
CTGACTGTAAAAAAAAAAAAAAAA
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