CK739698

Overview
NameCK739698
Unique NameCK739698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length255
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHI_RHOS4 (Alcohol dehydrogenase class-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=adhI PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.617e-19
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 2
Query:    5 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTD------GGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 250
            AGA  +IG+D++  K +  + FG+T FVNP + D  +   LV++T       GG DY+F+C GNV VMR ALE CH+GWG S+++GVA
Sbjct:  210 AGADMIIGVDLNNAKKEWGERFGMTHFVNPSEIDGDVVAHLVNMTKTPFDQIGGADYTFDCTGNVKVMRQALEACHRGWGQSIVIGVA 297          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHQ_RABIT (Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctolagus cuniculus GN=ADH2-2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.256e-18
Identity = 38/81 (46.91%), Postives = 59/81 (72.84%), Query Frame = 2
Query:    5 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AGASR+I +DI+  KF +AK  G T+ +NP++ +KP+Q V+V++T+GGVD++ +C G   VM+A ++C   GWG+   VGV
Sbjct:  220 AGASRIIAVDINSDKFAKAKALGATDCLNPRELNKPVQDVIVEMTNGGVDFAIDCAGGSEVMKATVDCTTVGWGSCTFVGV 300          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.798e-18
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 244
            AAGASR+IGIDI+  KF +A   G TE ++PKD  KPI +VL D+T   V Y+FE IG +  M  AL  CH  +GTSV+VG
Sbjct:  213 AAGASRIIGIDINKDKFQKALAVGATECISPKDSTKPISEVLSDMTGNTVQYTFEVIGRLETMVDALSSCHMNYGTSVVVG 293          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.798e-18
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            AAGA+R+I +DI+  +F +AK  G T+ V+P+D +KPI++VL D+ DGGVD+ FE  GN   + AAL  CHK  G  V VG  A
Sbjct:  214 AAGAARIIAVDINKDRFAKAKTVGATDCVDPRDFEKPIEEVLSDMIDGGVDFCFEVTGNTEAVGAALGSCHKDHGVCVTVGALA 297          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHL4_ARATH (Alcohol dehydrogenase-like 4 OS=Arabidopsis thaliana GN=At1g64710 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.655e-18
Identity = 38/84 (45.24%), Postives = 61/84 (72.62%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            A GAS++IGIDI+P KF   +  G++EF+NPK+ DK + + ++++T+GGV+YSFEC G++  +R A    + G G +V++GV A
Sbjct:  219 ARGASKIIGIDINPDKFQLGREAGISEFINPKESDKAVHERVMEITEGGVEYSFECAGSIEALREAFLSTNSGVGVTVMLGVHA 302          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.655e-18
Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            +AGASR+IGID++  KF++A   G TE ++PKD  KPI +VL ++T   V Y+FE IG++  M  AL  CH  +GTSV+VGV
Sbjct:  213 SAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGV 294          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH8_RANPE (NADP-dependent alcohol dehydrogenase OS=Rana perezi GN=ADH8 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.814e-17
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            AAGASR+IG+     KF +A   G TE +NPKD+DKPI +V+ + T+GGVDY+ EC G +  M  AL+  + G G +V++G+A+
Sbjct:  213 AAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLAS 296          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH6_PERMA (Alcohol dehydrogenase 6 OS=Peromyscus maniculatus GN=ADH6 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.369e-17
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            AAGA+R+I +D +  KF +AK  G TE ++P+D +KPIQQVL D+ + G D++FE  GN   +  AL  CHK  G  VIVG  A
Sbjct:  214 AAGAARIIAVDTNKDKFAKAKTVGATECIDPQDFEKPIQQVLFDMMNDGADFTFEVTGNPETVETALASCHKDHGVCVIVGSLA 297          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHL2_ARATH (Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.896e-15
Identity = 36/81 (44.44%), Postives = 57/81 (70.37%), Query Frame = 2
Query:    8 GASRVIGIDIDPKKFDRAKNFGVTEFVNPK-DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            GA+++IG+D++P KF+  K FG+T+FVNP    +K I +V+ ++TD G DYSFECIG  S+M  A +    G G ++++G+
Sbjct:  224 GAAKIIGVDLNPAKFEIGKRFGITDFVNPALCGEKTISEVIREMTDVGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGM 304          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHL1_ARATH (Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    8 GASRVIGIDIDPKKFDRAKNFGVTEFVNPK-DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            GA+++IGID +  KF+  K FG T+F+NP    +K I +V+ ++T+GGVDYSFEC+G  S++  A      G G +V++G+
Sbjct:  226 GAAKIIGIDTNSDKFELGKKFGFTDFINPTLCGEKKISEVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGM 306          
The following BLAST results are available for this feature:
BLAST of CK739698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADHI_RHOS49.617e-1947.73Alcohol dehydrogenase class-3 OS=Rhodobacter sphae... [more]
ADHQ_RABIT1.256e-1846.91Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctol... [more]
ADH7_MOUSE2.798e-1854.32Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]
ADH6_RAT2.798e-1850.00Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]
ADHL4_ARATH3.655e-1845.24Alcohol dehydrogenase-like 4 OS=Arabidopsis thalia... [more]
ADH7_HUMAN3.655e-1851.22Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
ADH8_RANPE1.814e-1747.62NADP-dependent alcohol dehydrogenase OS=Rana perez... [more]
ADH6_PERMA2.369e-1748.81Alcohol dehydrogenase 6 OS=Peromyscus maniculatus ... [more]
ADHL2_ARATH2.896e-1544.44Alcohol dehydrogenase-like 2 OS=Arabidopsis thalia... [more]
ADHL1_ARATH7.132e-1443.21Alcohol dehydrogenase-like 1 OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6085 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739698 ID=CK739698; Name=CK739698; organism=Citrus sinensis; type=EST; length=255bp
GGCAGCTGGAGCTTCACGTGTTATTGGTATAGATATTGACCCAAAAAAGT
TTGATAGAGCAAAGAATTTTGGAGTTACTGAATTTGTAAATCCCAAGGAC
CATGACAAACCCATTCAGCAGGTCCTTGTCGATCTCACGGATGGTGGTGT
TGACTATAGTTTTGAATGCATTGGCAATGTCTCTGTGATGAGGGCAGCTT
TGGAATGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCT
GCATC
back to top