CK739698

Overview
NameCK739698
Unique NameCK739698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length255
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.194e-22
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AAGA+R+IG+DI+  KF +AK  G TE VNP+D+ KPIQ+VL ++++GGVD+SFE IG +  M  AL CC + +G SVIVGV
Sbjct:  214 AAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGV 295          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.172e-22
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 2
Query:    8 GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH---DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            GAS++I IDI+ KK      FG T+FVNPK+    D+ I + L+++TDGG+D++F+C GN  +MR ALE CHKGWG S+I+GVAA
Sbjct:  220 GASKIIAIDINNKKKQYCSQFGATDFVNPKEDLAKDQTIVEKLIEMTDGGLDFTFDCTGNTKIMRDALEACHKGWGQSIIIGVAA 304          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 102.064 bits (253), Expect = 9.293e-22
Identity = 45/84 (53.57%), Postives = 63/84 (75.00%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            AAGASR+IGIDI+ +KF +AK  G T+ +NP+D  KPIQ+V+++LT GGVD++ +C G    M+AAL+C   GWG+   +GVAA
Sbjct:  219 AAGASRIIGIDINSEKFVKAKALGATDCLNPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAA 302          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH1A_UROHA (Alcohol dehydrogenase 1A OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.293e-22
Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AAGASR+IG+DI+  KF +AK  G TE VNP D+ KPI +VL DLT G GVDYSFE IG    M AAL  CH  +GTS+IVG+
Sbjct:  213 AAGASRIIGVDINKDKFPKAKEMGATECVNPLDYKKPINEVLFDLTGGEGVDYSFEVIGRTDTMTAALASCHMDYGTSIIVGL 295          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.214e-21
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 250
            AAGAS++ GIDI+  KF  AK  G T+ +NP+D  KP+Q+++ ++T+GGVD++ ECIGN  VM+AA E    GWGT VIVGVA
Sbjct:  218 AAGASKIFGIDINKDKFPLAKKLGATDCLNPQDIRKPVQEIIAEMTNGGVDFAIECIGNPDVMKAAFESTTVGWGTCVIVGVA 300          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.214e-21
Identity = 48/82 (58.54%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AAGASR+I +DI+  KF +AK  G TE +NPKD  KPI +VL ++T  GVDYSFE IG +  M AAL  CH  +G SVIVGV
Sbjct:  215 AAGASRIIAVDINKDKFAKAKELGATECINPKDFKKPIHEVLTEMTGQGVDYSFEVIGRIETMTAALASCHNNYGVSVIVGV 296          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH1_STRCA (Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.070e-21
Identity = 49/82 (59.76%), Postives = 60/82 (73.17%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AAGASR+IG+DI+  KF +AK  G T+ VNPKD  KPI +VL+++T  GVDYSFE IG+   M AAL  CH  +G SVIVGV
Sbjct:  213 AAGASRIIGVDINKDKFAKAKELGATDCVNPKDFTKPIHEVLMEMTGLGVDYSFEVIGHTETMAAALASCHFNYGVSVIVGV 294          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH1_MOUSE (Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.070e-21
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AAGA+R+I +DI+  KF +AK  G TE +NP+D+ KPIQ+VL ++TDGGVD+SFE IG +  M +AL  CH   G SV+VGV
Sbjct:  214 AAGAARIIAVDINKDKFAKAKELGATECINPQDYSKPIQEVLQEMTDGGVDFSFEVIGRLDTMTSALLSCHAACGVSVVVGV 295          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH1_GEOAT (Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH1 PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 2.704e-21
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AAGA+R+I +DI+  KF +AK  G TE VNP+D+DKPI +VL ++TDGGVD+SFE IG +    +AL CC +  G SVIVGV
Sbjct:  214 AAGAARIIAVDINKDKFAKAKELGATECVNPQDYDKPIYEVLQEMTDGGVDFSFEVIGRLDTKVSALMCCQESHGVSVIVGV 295          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH1_RABIT (Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.532e-21
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AAGASR+I +DI+  KF +AK  G TE +NP+D+ KPIQ+V+ +++DGGVD+SFE IG +  + AAL  CH   GTSVIVGV
Sbjct:  214 AAGASRIIAVDINKDKFPKAKEVGATECINPQDYKKPIQEVIQEISDGGVDFSFEVIGRLDTVVAALLSCHGACGTSVIVGV 295          
The following BLAST results are available for this feature:
BLAST of CK739698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADH1E_HORSE3.194e-2257.32Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
FADH_YEAST4.172e-2254.12S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
ADH4_HUMAN9.293e-2253.57Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADH1A_UROHA9.293e-2261.45Alcohol dehydrogenase 1A OS=Uromastyx hardwickii P... [more]
ADH4_STRCA1.214e-2155.42Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH... [more]
ADH1_CHICK1.214e-2158.54Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]
ADH1_STRCA2.070e-2159.76Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH... [more]
ADH1_MOUSE2.070e-2156.10Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE... [more]
ADH1_GEOAT2.704e-2157.32Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH... [more]
ADH1_RABIT3.532e-2157.32Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6085 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739698 ID=CK739698; Name=CK739698; organism=Citrus sinensis; type=EST; length=255bp
GGCAGCTGGAGCTTCACGTGTTATTGGTATAGATATTGACCCAAAAAAGT
TTGATAGAGCAAAGAATTTTGGAGTTACTGAATTTGTAAATCCCAAGGAC
CATGACAAACCCATTCAGCAGGTCCTTGTCGATCTCACGGATGGTGGTGT
TGACTATAGTTTTGAATGCATTGGCAATGTCTCTGTGATGAGGGCAGCTT
TGGAATGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCT
GCATC
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