CK739698

Overview
NameCK739698
Unique NameCK739698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length255
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:843..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH1_ANAPL (Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrhynchos GN=ADH1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.532e-21
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AAGASR+I +DI+  KF +AK  G T+ +NPKDH +PI +VL+ +T  GVDYSFE IG +  M AAL  CH  +G SVIVGV
Sbjct:   24 AAGASRIIAVDINSDKFAKAKELGATDCINPKDHKEPIHKVLIGMTGYGVDYSFEVIGRIETMVAALASCHYNYGVSVIVGV 105          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHX_CAEEL (Alcohol dehydrogenase class-3 OS=Caenorhabditis elegans GN=H24K24.3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.612e-21
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP----IQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 250
            AAGA +++GID+   KF+ AK FG TE +NPK  + P     Q  LV+  DGG DY+FECIGNV  MR ALE  HKGWG S I+GVA
Sbjct:  216 AAGAKKIVGIDLIESKFESAKFFGATECINPKSVELPEGKSFQAWLVEQFDGGFDYTFECIGNVHTMRQALEAAHKGWGVSCIIGVA 302          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH1_COTJA (Alcohol dehydrogenase 1 OS=Coturnix coturnix japonica GN=ADH1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.612e-21
Identity = 49/82 (59.76%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AAGASR+I IDI+  KF +AK  G TE VNPKD  KPI +VL ++T  GVDYSFE IG +  M  AL  CH  +G SVIVGV
Sbjct:  214 AAGASRIIAIDINKDKFAKAKELGATECVNPKDFKKPIHEVLTEMTGKGVDYSFEVIGRIETMTEALASCHYNYGVSVIVGV 295          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH6_HUMAN (Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.024e-21
Identity = 43/82 (52.44%), Postives = 63/82 (76.83%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AAGA+R+IG+D++ +KF +A+  G TE +NP+D  KPIQ+VL D+TD G+D+ FE IGN+ V+ AAL  C++ +G  V+VGV
Sbjct:  214 AAGAARIIGVDVNKEKFKKAQELGATECLNPQDLKKPIQEVLFDMTDAGIDFCFEAIGNLDVLAAALASCNESYGVCVVVGV 295          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.867e-21
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AAGA+R+I +DI+  KF +AK  G TE +NP D+ KPIQ+VL ++TDGGVD+SFE IG +  M ++L  CH   G SVIVGV
Sbjct:  214 AAGAARIIAVDINKDKFAKAKELGATECINPLDYSKPIQEVLQEMTDGGVDFSFEVIGRLDTMTSSLLSCHASCGVSVIVGV 295          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.028e-20
Identity = 42/82 (51.22%), Postives = 63/82 (76.83%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AAGA+R+IG+D++ +KF +A+  G TE +NP+D  KPIQ+VL D+TD G+D+ FE IGN+ V+ AAL  C++ +G  V+VG+
Sbjct:  214 AAGATRIIGVDVNKEKFKKARELGATECLNPQDLKKPIQEVLFDMTDAGIDFCFEAIGNLDVLAAALASCNESYGVCVVVGL 295          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH1_APTAU (Alcohol dehydrogenase 1 OS=Apteryx australis GN=ADH1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.753e-20
Identity = 48/82 (58.54%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AAGASR+I IDI+  KF +AK  G T+ VNPKD  KPI +VL+++T  GVDYSFE IG+   M AAL  CH  +G SVI+GV
Sbjct:  214 AAGASRIIAIDINKDKFAKAKELGATDCVNPKDFTKPIHEVLMEMTGLGVDYSFEVIGHTETMAAALASCHFNYGVSVILGV 295          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 2.289e-20
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    5 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AGA+++I +DI+  KF +AK  G T+ +NP+D+ KPIQ+VL ++TDGGVD+SFE IG +  M +AL  CH   G SVIVGV
Sbjct:  216 AGAAKIIAVDINKDKFAKAKELGATDCINPQDYTKPIQEVLQEMTDGGVDFSFEVIGRLDTMTSALLSCHSACGVSVIVGV 296          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH1_NAJNA (Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.289e-20
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AAGASR+IG+DI+  KF +AK  G TE +NP D  KPI +VL DLT G GVDYSFE IG    M +A   CH+  GTSV+VGV
Sbjct:  213 AAGASRIIGVDINKDKFAKAKEMGATECINPLDFKKPINEVLFDLTGGEGVDYSFEVIGRTETMISAFTSCHQNLGTSVVVGV 295          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH1_RANPE (Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.905e-20
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 2
Query:    5 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 250
            AGASR+IG+D++  KF  AK  G TE +NPKD++ PI +VL  +TD GVDY+FE IGN +VM +AL   H G G +VIVG+A
Sbjct:  215 AGASRIIGVDLNSDKFTTAKECGATECINPKDYNIPIHEVLAKMTDDGVDYAFEVIGNTTVMTSALSSSHFGCGKTVIVGLA 296          
The following BLAST results are available for this feature:
BLAST of CK739698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADH1_ANAPL3.532e-2157.32Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrh... [more]
ADHX_CAEEL4.612e-2156.32Alcohol dehydrogenase class-3 OS=Caenorhabditis el... [more]
ADH1_COTJA4.612e-2159.76Alcohol dehydrogenase 1 OS=Coturnix coturnix japon... [more]
ADH6_HUMAN6.024e-2152.44Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE... [more]
ADH1_PERMA7.867e-2156.10Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
ADH6_PONAB1.028e-2051.22Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
ADH1_APTAU1.753e-2058.54Alcohol dehydrogenase 1 OS=Apteryx australis GN=AD... [more]
ADH1_RAT2.289e-2054.32Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad... [more]
ADH1_NAJNA2.289e-2059.04Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1[more]
ADH1_RANPE3.905e-2056.10Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6085 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739698 ID=CK739698; Name=CK739698; organism=Citrus sinensis; type=EST; length=255bp
GGCAGCTGGAGCTTCACGTGTTATTGGTATAGATATTGACCCAAAAAAGT
TTGATAGAGCAAAGAATTTTGGAGTTACTGAATTTGTAAATCCCAAGGAC
CATGACAAACCCATTCAGCAGGTCCTTGTCGATCTCACGGATGGTGGTGT
TGACTATAGTTTTGAATGCATTGGCAATGTCTCTGTGATGAGGGCAGCTT
TGGAATGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCT
GCATC
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