CK739698

Overview
NameCK739698
Unique NameCK739698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length255
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:843..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.100e-20
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 2
Query:    8 GASRVIGIDIDPKKFDRAKNFGVTEFVNPKD--HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            GAS +I IDI+  K   A  FG T+FVNP        I   L+D+TDGG DY+F+C GNV VMR ALE CHKGWG S+I+GVAA
Sbjct:  217 GASEIIVIDINDSKKAWADQFGATKFVNPTTLPEGTNIVDYLIDITDGGFDYTFDCTGNVQVMRNALESCHKGWGESIIIGVAA 300          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: FADH_PARDE (S-(hydroxymethyl)glutathione dehydrogenase OS=Paracoccus denitrificans GN=flhA PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.698e-20
Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    5 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTD------GGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 250
            AGA  +IG+D++  K   A++FG+T F+NPK+ +  +Q++ V+LT       GG DYSF+C GNV VMR ALEC H+GWG S+I+GVA
Sbjct:  210 AGADMIIGVDLNDDKKPMAEHFGMTHFINPKNCENVVQEI-VNLTKTPFDQIGGADYSFDCTGNVKVMRDALECTHRGWGQSIIIGVA 296          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.698e-20
Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            AAGASR+I IDI+  K   AK FG T+F++     K + Q ++D+TDGGVDY+F+C GNV+VM+  L+ CHKGWG   ++GVAA
Sbjct:  215 AAGASRIIAIDINADKEVYAKKFGATDFID-SSKVKDLVQYVIDVTDGGVDYAFDCTGNVTVMQQELQFCHKGWGKLCVIGVAA 297          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.136e-19
Identity = 40/80 (50.00%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 244
            AGASR+I IDI+ +KF +AK  G T+ +NP+D DKP+Q V+ +LT GGVD+S +C G    ++AA++C   GWG+  +VG
Sbjct:  219 AGASRIIAIDINSEKFPKAKALGATDCLNPRDLDKPVQDVITELTGGGVDFSLDCAGTAQTLKAAVDCTVVGWGSCTVVG 298          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 1.938e-19
Identity = 40/80 (50.00%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 244
            AGASR+I IDI+ +KF +AK  G T+ +NP++ DKP+Q V+ +LT GGVDYS +C G    ++AA++C   GWG+  +VG
Sbjct:  219 AGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVG 298          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.531e-19
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 2
Query:    8 GASRVIGIDIDPKKFDRAKNFGVTEFVNPKD--HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            GA+++I +DI  KK +  +  G T FVNP        I   L+++TDGG D++F+C GNV VMR ALE CHKGWGTSVI+GVAA
Sbjct:  219 GAAQIILVDISDKKEEWGQKLGATAFVNPTKLPEGTTIVDKLIEMTDGGCDFTFDCTGNVGVMRNALEACHKGWGTSVIIGVAA 302          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHL6_ARATH (Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.305e-19
Identity = 38/80 (47.50%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    8 GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            GA++++G+DI+P K ++AK FGVT+F+N  D  +PI QV+  +T GG D+SFEC+G+  +   AL+ C  GWG +V +GV
Sbjct:  220 GAAQILGVDINPAKAEQAKTFGVTDFINSNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGV 299          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHP_RABIT (Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctolagus cuniculus GN=ADH2-1 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.364e-19
Identity = 39/81 (48.15%), Postives = 59/81 (72.84%), Query Frame = 2
Query:    5 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            AGASR+I IDI+  KF +AK  G T+ +NP++ +KP+Q V+V++T+GGVD++ +C G   VM+A ++C   GWG+   VGV
Sbjct:  220 AGASRIIAIDINSDKFAKAKALGATDCLNPRELNKPVQDVIVEMTNGGVDFAIDCAGGSEVMKATVDCATVGWGSCTFVGV 300          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHL7_ARATH (Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.364e-19
Identity = 40/81 (49.38%), Postives = 59/81 (72.84%), Query Frame = 2
Query:    8 GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP-IQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 247
            GASR+IG+DI+P KF   + FGVTEFVN    +K  + +V+ ++TDGG DY FEC+G+ S+++ A  CC +GWG ++ +GV
Sbjct:  228 GASRIIGVDINPTKFQVGQKFGVTEFVNSMTCEKNRVSEVINEMTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGV 308          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.364e-19
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 244
            AAGASR+IGIDI+  KF +A + G TE +NP+D  KPI +VL D+T   V Y+FE IG +  M  AL  CH  +GTSV+VG
Sbjct:  213 AAGASRIIGIDINKDKFQKALDVGATECINPRDFTKPISEVLSDMTGNTVQYTFEVIGRLETMVDALSSCHMNYGTSVVVG 293          
The following BLAST results are available for this feature:
BLAST of CK739698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FADH_PICPA5.100e-2057.14S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
FADH_PARDE8.698e-2051.14S-(hydroxymethyl)glutathione dehydrogenase OS=Para... [more]
FADH1_SCHPO8.698e-2053.57Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADH4_RAT1.136e-1950.00Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]
ADH4_MOUSE1.938e-1950.00Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]
FADH_CANMA2.531e-1953.57S-(hydroxymethyl)glutathione dehydrogenase OS=Cand... [more]
ADHL6_ARATH3.305e-1947.50Alcohol dehydrogenase-like 6 OS=Arabidopsis thalia... [more]
ADHP_RABIT7.364e-1948.15Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctol... [more]
ADHL7_ARATH7.364e-1949.38Alcohol dehydrogenase-like 7 OS=Arabidopsis thalia... [more]
ADH7_RAT7.364e-1954.32Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6085 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739698 ID=CK739698; Name=CK739698; organism=Citrus sinensis; type=EST; length=255bp
GGCAGCTGGAGCTTCACGTGTTATTGGTATAGATATTGACCCAAAAAAGT
TTGATAGAGCAAAGAATTTTGGAGTTACTGAATTTGTAAATCCCAAGGAC
CATGACAAACCCATTCAGCAGGTCCTTGTCGATCTCACGGATGGTGGTGT
TGACTATAGTTTTGAATGCATTGGCAATGTCTCTGTGATGAGGGCAGCTT
TGGAATGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCT
GCATC
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