CK739702

Overview
NameCK739702
Unique NameCK739702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.300e-15
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   22 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:   53 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 113          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.300e-15
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   22 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  109 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.698e-15
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   22 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  109 YQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.782e-15
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   22 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            Y D RYWTMWKLPM+GCTD +QVL ++    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  110 YQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRPP 170          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.939e-15
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   22 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            Y D RYWTMWKLPM+GCTD +QVL E+      +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  110 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.939e-15
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   22 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            Y D RYWTMWKLPM+GCTD +QVL E+      +P +++R++ FD  RQVQ   FL  +PP
Sbjct:  109 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.201e-14
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   22 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201
            Y D RYWTMWKLPM+GC D +QVL E+    K +P +++R++ FD  RQVQ   FL  +P
Sbjct:  102 YQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 161          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.757e-12
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   37 YWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201
            YWTMWKLP++  T   +VL EV E + EYP+ ++R++GFDN +Q Q +SF+  KP
Sbjct:   52 YWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFIVHKP 106          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.675e-12
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    7 HSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201
            HS+P  +   YWTMWKLP++ C    QVL EV E + EY   ++R+ GFDN +Q Q +SF+  +P
Sbjct:   47 HSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFIVHRP 108          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.487e-11
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   37 YWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201
            +WTMWKLP +G   A +VL EV E + E P+ ++R+IGFDN +Q Q +SF+  KP
Sbjct:   52 FWTMWKLPFFGGATANEVLAEVRECRSENPNCYIRVIGFDNIKQCQTVSFIVHKP 106          
The following BLAST results are available for this feature:
BLAST of CK739702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS1_ACECL1.300e-1554.10Ribulose bisphosphate carboxylase small chain 1 (F... [more]
RBS1_ACEAT1.300e-1554.10Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS6_ACECL1.698e-1554.10Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS7_ACECL3.782e-1552.46Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS5_ACEAT4.939e-1552.46Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACEAT4.939e-1552.46Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_BATOE3.201e-1451.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PROHO1.757e-1250.91Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_SYNP66.675e-1246.15Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNY31.487e-1150.91Ribulose bisphosphate carboxylase small chain OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6089 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739702 ID=CK739702; Name=CK739702; organism=Citrus sinensis; type=EST; length=374bp
GAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTG
GAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGG
TTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGA
TTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCC
ACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATAT
TGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGG
GGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAA
ACTTTTTTGGTTTTCTCCCAAAAA
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