CK739702

Overview
NameCK739702
Unique NameCK739702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12425 contig Csv1_Contig12425:428..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.895e-28
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            EH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:  109 EHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.895e-28
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            EH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:  109 EHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.088e-28
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            E+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  111 ENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.088e-28
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            EH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:  109 EHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.088e-28
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            E+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  111 ENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.088e-28
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            EH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:  109 EHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.088e-28
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            EH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:  109 EHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.644e-28
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201
            E+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:  110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.644e-28
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201
            E+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:  110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.644e-28
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201
            E+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:  110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
The following BLAST results are available for this feature:
BLAST of CK739702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS2_BRANA3.895e-2876.47Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS1_BRANA3.895e-2876.47Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3B_SOLLC5.088e-2878.26Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3B_ARATH5.088e-2876.47Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC5.088e-2878.26Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS2B_ARATH5.088e-2876.47Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS1B_ARATH5.088e-2876.47Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBS6_LEMGI6.644e-2879.10Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS5_LEMGI6.644e-2879.10Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS4_LEMGI6.644e-2879.10Ribulose bisphosphate carboxylase small chain SSU4... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6089 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739702 ID=CK739702; Name=CK739702; organism=Citrus sinensis; type=EST; length=374bp
GAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTG
GAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGG
TTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGA
TTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCC
ACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATAT
TGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGG
GGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAA
ACTTTTTTGGTTTTCTCCCAAAAA
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