CK739702

Overview
NameCK739702
Unique NameCK739702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 4.307e-27
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201
            E+++SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:  106 ENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.346e-27
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            E++ SPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K YP S +RIIGFDNKRQVQCISF+A KPP
Sbjct:  113 ENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.346e-27
Identity = 48/67 (71.64%), Postives = 61/67 (91.04%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201
            E+H SPG+YDGRYWTMWKLPM+GCTD++QV++E+ E +KEYP +F+R+IGFDN RQVQCISF+A KP
Sbjct:  113 ENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.595e-27
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            E+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  104 ENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.595e-27
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            E+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  104 ENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.595e-27
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            E+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  109 ENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 177          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.595e-27
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            E+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  104 ENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.595e-27
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            E+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  109 ENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.595e-27
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201
            E+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KP
Sbjct:  114 ENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 52/69 (75.36%), Postives = 57/69 (82.61%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            EH   PGYYDGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P  + RIIGFDN RQVQCISFLA KPPG
Sbjct:  113 EHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
The following BLAST results are available for this feature:
BLAST of CK739702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS1_LEMGI4.307e-2777.61Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS_FAGCR7.346e-2776.47Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CUCSA7.346e-2771.64Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS7_FLAPR9.595e-2772.46Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS5_FLAPR9.595e-2772.46Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_FLAPR9.595e-2772.46Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_FLAPR9.595e-2772.46Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FLAPR9.595e-2772.46Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_AMAHP9.595e-2776.12Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_MANES1.253e-2675.36Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6089 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739702 ID=CK739702; Name=CK739702; organism=Citrus sinensis; type=EST; length=374bp
GAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTG
GAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGG
TTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGA
TTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCC
ACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATAT
TGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGG
GGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAA
ACTTTTTTGGTTTTCTCCCAAAAA
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