CK739702

Overview
NameCK739702
Unique NameCK739702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            EH+ S GYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISF+A KPP
Sbjct:  109 EHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            E+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  104 ENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPGG 172          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.637e-26
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201
            EH SSPGYYDGRYWTMWKLPM+GCTDATQV  EV E +K YP + +RIIGFDN RQVQCISF+A KP
Sbjct:  111 EHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.137e-26
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            E+H SPGYYDGRYWTMWKLPM+GCTDA QVL+E+ E+ K YP  + RIIGFDN RQVQCISFLA KP G
Sbjct:  113 EYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.646e-26
Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201
            E+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP
Sbjct:  104 ENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.762e-26
Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            E+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI F+A++P G
Sbjct:  109 ENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.762e-26
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201
            +++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  KP
Sbjct:  112 DNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.762e-26
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201
            +++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  KP
Sbjct:  112 DNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.219e-26
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            EH+ SPGYYDGRYWTMWKLPM+GC   TQV+ EV EV+KEYP  + RIIGFDN RQVQ +SF+A+KPPG
Sbjct:  100 EHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.061e-25
Identity = 46/67 (68.66%), Postives = 58/67 (86.57%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201
            +++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  +P
Sbjct:  112 DNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
The following BLAST results are available for this feature:
BLAST of CK739702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS4_SOYBN1.253e-2675.00Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1_FLAPR1.253e-2672.46Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_STELP1.637e-2677.61Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR2.137e-2675.36Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_FLAPR3.646e-2673.13Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS_HELAN4.762e-2669.57Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_FRIAG4.762e-2670.15Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FRIAG4.762e-2670.15Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_AEGTA6.219e-2672.46Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_FRIAG1.061e-2568.66Ribulose bisphosphate carboxylase small chain 1/4,... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6089 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739702 ID=CK739702; Name=CK739702; organism=Citrus sinensis; type=EST; length=374bp
GAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTG
GAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGG
TTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGA
TTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCC
ACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATAT
TGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGG
GGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAA
ACTTTTTTGGTTTTCTCCCAAAAA
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