CK739702
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 3.086e-25 Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 1 Query: 1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201 EH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F RIIGFDN RQVQCISF+A KP Sbjct: 109 EHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 5.265e-25 Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 1 Query: 1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207 ++ S P YYDGRYWTMWKLPM+GCTD+ QVL+E+ +KEYP++F+RIIGFDN RQVQCISF+A KP G Sbjct: 113 KYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKPKG 181
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 6.876e-25 Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 1 Query: 1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201 E+H SPGYYDGRYWTMW+LP++G TD++QVLKE+ + + EYP SF+RIIGFDN RQVQCISF+A P Sbjct: 111 ENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.001e-24 Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 1 Query: 10 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201 +SPGYYDGRYW MWKLPM+GCT+A+QVL EV E K YP++F+R+IGFDN RQVQCISF+ KP Sbjct: 123 NSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 2.613e-24 Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1 Query: 1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207 E+ +SP YYDGRYWTMWKLPM+GC DATQV KE+ E K YP +F R+IGFDN +Q QC+SF+A KPPG Sbjct: 100 ENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 5.821e-24 Identity = 45/67 (67.16%), Postives = 56/67 (83.58%), Query Frame = 1 Query: 1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201 +++ SPGYYDGRYW MWKLPM+GCT+A+QV+ EV E K YP +F+R+IGFDN RQVQCISF+ KP Sbjct: 104 KYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.297e-23 Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 1 Query: 1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207 EH SPGYYDGRYWTMWKLPM+G TD QV+ EV EV+K P +FVR IGF++KR+VQCISF+A KP G Sbjct: 54 EHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.889e-23 Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 1 Query: 1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201 EH+ SP YYDGRYWTMWKLPM+G TD QV+KEV EV YP +FVR+IGF+N RQVQCISF+A P Sbjct: 67 EHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.136e-19 Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 1 Query: 10 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207 ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 197 TAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 262 HSP 2 Score: 95.1301 bits (235), Expect = 1.136e-19 Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 1 Query: 10 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207 ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 341 TAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 406 HSP 3 Score: 95.1301 bits (235), Expect = 1.136e-19 Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 1 Query: 10 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207 ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 628 TAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 693 HSP 4 Score: 95.1301 bits (235), Expect = 1.136e-19 Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 1 Query: 10 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207 ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 771 TAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 836 HSP 5 Score: 95.1301 bits (235), Expect = 1.136e-19 Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 1 Query: 10 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207 ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 1059 TAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 1124 HSP 6 Score: 93.2041 bits (230), Expect = 4.317e-19 Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = 1 Query: 10 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207 ++ GYYD YWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 484 TAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 549 HSP 7 Score: 93.2041 bits (230), Expect = 4.317e-19 Identity = 37/64 (57.81%), Postives = 51/64 (79.69%), Query Frame = 1 Query: 10 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201 ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P Sbjct: 1203 TAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 1266 HSP 8 Score: 90.8929 bits (224), Expect = 2.142e-18 Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 1 Query: 10 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207 ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR + FD+ +QVQ ISF+ +P G Sbjct: 916 TAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISFVVQRPSG 980
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.531e-19 Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1 Query: 13 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 201 S GYYD RYWTMWKLPM+GCTD +QVL+EV Q +P+ ++R++ FDN +QVQC+ FL +P Sbjct: 92 SAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154 The following BLAST results are available for this feature:
BLAST of CK739702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 112
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739702 ID=CK739702; Name=CK739702; organism=Citrus sinensis; type=EST; length=374bpback to top |