CK739703

Overview
NameCK739703
Unique NameCK739703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_CHLRE (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.525e-16
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 194
            FLY+AG+IG+VGR YLIA+ GE KP  KEIIIDVPLA++L ++G  WP+AA +E   G L+ K+
Sbjct:  156 FLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLLEKE 219          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_GRATL (Photosystem I reaction center subunit III OS=Gracilaria tenuistipitata var. liui GN=psaF PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.013e-16
Identity = 40/67 (59.70%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVV--KDV 197
            FLYI GWIGWVGR YL  IS   KP  KEII+DVPLA +    GF+WP+AA +E  +GELV   KD+
Sbjct:  116 FLYITGWIGWVGRGYLRDISQTTKPTEKEIILDVPLALKYCLSGFTWPLAAIKELTSGELVADNKDI 182          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_ODOSI (Photosystem I reaction center subunit III OS=Odontella sinensis GN=psaF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.026e-15
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 194
            F+YI+GWIGWVGR YL A+S  K P   EIII+VPLA +++  G+ WP++A++EF++ +LV  D
Sbjct:  114 FIYISGWIGWVGRKYLRAVSTTKNPTESEIIINVPLALKIMTTGYIWPISAWQEFISNDLVALD 177          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_GUITH (Photosystem I reaction center subunit III OS=Guillardia theta GN=psaF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.026e-15
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 194
            FLYIAGWIGWVGR+Y+   S   KP  KEIIIDVP+A   +  G+ WP AA++EF +G L+ K+
Sbjct:  112 FLYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWPFAAFKEFTSGNLIAKE 175          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_ANAVT (Photosystem I reaction center subunit III OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaF PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 194
            FLYIAGWIGWVGR+YL AI  +     KEI +D+ LA  ++  GF+WP AA +E ++GEL  KD
Sbjct:   93 FLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGLALPIIATGFAWPAAAVKELLSGELTAKD 156          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_CYAPA (Photosystem I reaction center subunit III OS=Cyanophora paradoxa GN=psaF PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.300e-14
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 194
            FLYIAG+IGW GRSYL A++       KEIIID+P+A + V +GF WP+AA +EF +G+L  +D
Sbjct:  115 FLYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPLAALQEFSSGKLTARD 178          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_ANASP (Photosystem I reaction center subunit III OS=Anabaena sp. (strain PCC 7120) GN=psaF PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.309e-14
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 194
            FLYIAGWIGWVGR+YL AI  +     KEI +D+ +A  ++  GF+WP AA +E ++GEL  KD
Sbjct:   93 FLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGIALPIIATGFAWPAAAVKELLSGELTAKD 156          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_MASLA (Photosystem I reaction center subunit III OS=Mastigocladus laminosus GN=psaF PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.600e-14
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGE-KKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 194
            FLYIAGWIGWVGR+YL  I  +      KEI I++P+A  ++  GF+WP AA +EF++GEL  KD
Sbjct:   93 FLYIAGWIGWVGRAYLQTIKKQGSNVEQKEIQIELPIALPIMLSGFAWPAAAIKEFLSGELTAKD 157          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_CYACA (Photosystem I reaction center subunit III OS=Cyanidium caldarium GN=psaF PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.765e-13
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 194
            F+YIAGWIGW G+ YL       KP   EIIID+P A + +F GF+WP+ A +EF NG L+  +
Sbjct:  116 FIYIAGWIGWAGKGYLQYSKTLTKPNENEIIIDLPRALKYMFSGFAWPILALKEFKNGSLLASN 179          
The following BLAST results are available for this feature:
BLAST of CK739703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSAF_CHLRE3.525e-1659.38Photosystem I reaction center subunit III, chlorop... [more]
PSAF_GRATL6.013e-1659.70Photosystem I reaction center subunit III OS=Graci... [more]
PSAF_ODOSI1.026e-1553.13Photosystem I reaction center subunit III OS=Odont... [more]
PSAF_GUITH1.026e-1556.25Photosystem I reaction center subunit III OS=Guill... [more]
PSAF_ANAVT2.526e-1454.69Photosystem I reaction center subunit III OS=Anaba... [more]
PSAF_CYAPA3.300e-1454.69Photosystem I reaction center subunit III OS=Cyano... [more]
PSAF_ANASP4.309e-1453.13Photosystem I reaction center subunit III OS=Anaba... [more]
PSAF_MASLA9.600e-1453.85Photosystem I reaction center subunit III OS=Masti... [more]
PSAF_CYACA4.765e-1350.00Photosystem I reaction center subunit III OS=Cyani... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6090 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739703 ID=CK739703; Name=CK739703; organism=Citrus sinensis; type=EST; length=351bp
TGTTTTTGTACATAGCTGGATGGATCGGGTGGGTTGGCAGGAGCTACTTG
ATCGCCATTAGCGGTGAAAAGAAGCCGGCCATGAAGGAGATCATCATTGA
TGTTCCTTTGGCTTCCAGGTTGGTCTTCAGAGGTTTTAGCTGGCCTGTTG
CTGCTTACAGAGAGTTCGTTAATGGTGAACTTGTTGTCAAGGACGTTTAA
TCATTCTATCTATTTCTATCTCCTCTGGTAATCTCAATTTCTTTGTTGTA
ATTTTTCATTTCCATTTTTATTATGTGTCATGTGTTGTTGCTTACTTGCC
TGTGTAATTTGAGGCCGTGTGATTTATCATGGAATTATCAATTATGGATG
T
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