CK739706

Overview
NameCK739706
Unique NameCK739706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739706_ssr410 microsatellite CK739706_ssr410:410..421. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10455 contig Csv1_Contig10455:519..1128. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.714e-19
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  128 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGK-XXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            +E  DD  ILDA E+AG+DLP SCRAGSCSTCAGK             FL+DDQ+ AG+V+TCVAYPT D T+ TH++ E+
Sbjct:   19 LEVADDQTILDAGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            P+G+   +      ++D A +   DLP SC+AG+CSTC GK            FL+D+QI+ GYVLTC+A P SDV +ETHK++E+
Sbjct:    9 PDGDITFDVEPGERLIDIASEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.962e-15
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  128 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKD 358
            IE  ++T ILD AE+ GI+LP+SC +GSCS+C GK            FL+D+Q+  G+ L CV YP S+ T++TH++
Sbjct:   19 IEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSNCTIKTHQE 95          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  128 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKD 358
            IE  ++T ILD AE+ GI+LP+SC +GSCS+C GK            FL+D+Q+  G+ L CV YP S+ T++TH++
Sbjct:   19 IEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQE 95          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            P+G+   +      ++D   +   DLP SC+AG+CSTC GK            FL+D+QI+ GYVLTC+A P SDV +ETHK++E+
Sbjct:    9 PDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.735e-15
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  119 EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKD 358
            +  IE  +DT IL+ A + GI+LP+SC +GSCS+C GK            FL+D+Q+  G+ L CV YP S+ T++TH++
Sbjct:   16 DSTIEIDEDTTILEGAAENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSNCTIKTHQE 95          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 2
Query:  140 DDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKD 358
            +DT +L+AAE+A +DLP+SC +G+CS+C GK            FL+++Q+  G+VL CV YP +D T+ TH++
Sbjct:   23 EDTTVLEAAEEAELDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYPRTDCTIRTHQE 95          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 2
Query:  128 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKD 358
            I   ++T ILDAAE   I+LP+SC++GSCS+C  K            FL+++Q+  G+++ CV+YP SD T+ TH++
Sbjct:   19 IPVDENTTILDAAEQQDIELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQE 95          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 2
Query:  122 QEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            Q      D  +LD+A+ AG+DLP SC  G C+TCA +             +  +    GY L CVAYP SD+ +ETHK++E+
Sbjct:   15 QTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDEL 96          
The following BLAST results are available for this feature:
BLAST of CK739706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_APHSA1.714e-1956.79Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_EQUTE1.150e-1544.19Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1[more]
FERH_ANAVT1.962e-1545.45Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FERH_ANASP3.346e-1545.45Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]
FER2_EQUAR3.346e-1543.02Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FERH_FREDI9.735e-1542.50Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FER2_PLEBO1.271e-1443.84Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FERV_ANAVT2.398e-1341.56Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FER2_SYNP61.007e-1139.02Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739706 ID=CK739706; Name=CK739706; organism=Citrus sinensis; type=EST; length=612bp
CTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCTTAAAGCCAA
CAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACAAAGTCAAGC
TCATTACACCCCGAGGGAGAGCAAGAAATTGAGTGTCCTGATGACACATA
TATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGCA
GGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTGGTAGTGTT
GACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGATGCAGGTTA
TGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGTTGAGACAC
ACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATATAACATGGA
GAATTTTGATATTATTATTATTAATATTGTGTATGGGGTTGGTAATTTAG
TGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGAATGAGTA
ATATGAAAAGGGGGATTTTGCTCTGTACTTCCATTTGCTGTCACAAATGA
AGTTGTTGTAGCTTTACCATAATAAAGATAGAATCATCTCTTCTATAAAA
AAAAAAAAAAAA
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