CK739706

Overview
NameCK739706
Unique NameCK739706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.924e-29
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            PEGE E++ PDD YILD AE+ GIDLPYSCRAGSCS+CAGK            +L+D QI  G+VLTC AYPTSDV +ETHK+EE++
Sbjct:   62 PEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELT 148          

HSP 2 Score: 30.8018 bits (68), Expect = 5.924e-29
Identity = 17/37 (45.95%), Postives = 22/37 (59.46%), Query Frame = 1
Query:    7 AMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPRG 117
            A+P     + G  A++ R  R+ A ATY VKLITP G
Sbjct:   30 ALPAAKVGIMGRSASSRR--RLRAQATYNVKLITPEG 64          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.949e-29
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            P+GE E++ PDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+DDQ+ AG+VLTC AYP SDV +ETHK++++
Sbjct:   53 PDGEVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          

HSP 2 Score: 30.8018 bits (68), Expect = 5.949e-29
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 1
Query:   40 LKANNNRGGRVIAMATYKVKLITPRG 117
            L A+N  G R+   ATY VKLITP G
Sbjct:   30 LPASNKLGDRLRMQATYNVKLITPDG 55          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.949e-29
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            P+GE E++ PDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+DDQ+ AG+VLTC AYP SDV +ETHK++++
Sbjct:   53 PDGEVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          

HSP 2 Score: 30.8018 bits (68), Expect = 5.949e-29
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 1
Query:   40 LKANNNRGGRVIAMATYKVKLITPRG 117
            L A+N  G R+   ATY VKLITP G
Sbjct:   30 LPASNKLGDRLRMQATYNVKLITPDG 55          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_HORVU (Ferredoxin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.098e-29
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            PEGE E+E PDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+DDQ++ G+VLTC AYP SDV +ETHK+EE++
Sbjct:   10 PEGEVELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEELT 96          

HSP 2 Score: 25.7942 bits (55), Expect = 6.098e-29
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            ATYKVKL+TP G
Sbjct:    1 ATYKVKLVTPEG 12          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.941e-29
Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            PEG QE ECPDD YILD AE+ GI LPYSCRAGSCS+CAGK            FL+DDQI+ G+VLTCVAY  SDVT+ETHK+EE++
Sbjct:   10 PEGTQEFECPDDVYILDHAEEEGIVLPYSCRAGSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAYAKSDVTIETHKEEELT 96          

HSP 2 Score: 24.2534 bits (51), Expect = 7.941e-29
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            A+YKVKL+TP G
Sbjct:    1 ASYKVKLVTPEG 12          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FERB_ALOMA (Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 7.941e-29
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 2
Query:  110 PEGEQ-EIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            P G+  E ECPDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+DDQI  G+VLTCVAYPTSDV +ETHK+EE++
Sbjct:   10 PSGQPLEFECPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKNGNVDQSDGSFLDDDQIGEGWVLTCVAYPTSDVVIETHKEEELT 97          

HSP 2 Score: 25.7942 bits (55), Expect = 7.941e-29
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 1
Query:   82 ATYKVKLITPRGR 120
            ATYKVKL+TP G+
Sbjct:    1 ATYKVKLVTPSGQ 13          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.034e-28
Identity = 59/92 (64.13%), Postives = 66/92 (71.74%), Query Frame = 2
Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            K   L PEGE+E ECPDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL DD +DAGYVLTC AY  SDV +ETHK+EE+
Sbjct:    5 KVKLLTPEGEKEFECPDDVYILDNAEEIGIDLPYSCRAGSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAYANSDVVIETHKEEEV 96          

HSP 2 Score: 21.9422 bits (45), Expect = 1.034e-28
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:   88 YKVKLITPRG 117
            YKVKL+TP G
Sbjct:    4 YKVKLLTPEG 13          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_SOLAB (Ferredoxin OS=Solanum abutiloides PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.346e-28
Identity = 56/87 (64.37%), Postives = 65/87 (74.71%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            P+G  E ECPDD YILD AE+ G DLPYSCRAGSCS+CAGK            FL+DDQI  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:   10 PDGPVEFECPDDEYILDRAEEEGHDLPYSCRAGSCSSCAGKIAAGSVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEELT 96          

HSP 2 Score: 25.0238 bits (53), Expect = 1.346e-28
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            ATYKVKL+TP G
Sbjct:    1 ATYKVKLVTPDG 12          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.020e-28
Identity = 58/82 (70.73%), Postives = 66/82 (80.49%), Query Frame = 2
Query:  122 QEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            Q IE  DDTYILDAAE+AG+DLPYSCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYPTSD T+ETHK+EE+
Sbjct:   17 QTIEVDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEEL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_TOBAC (Ferredoxin OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.283e-28
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = 2
Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            K   + PEG  E +CPDD YILD AE+ G DLPYSCRAGSCS+CAGK            FL+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    4 KVKLITPEGAVEFDCPDDVYILDQAEEMGHDLPYSCRAGSCSSCAGKVTAGNVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELT 96          

HSP 2 Score: 24.6386 bits (52), Expect = 2.283e-28
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            A+YKVKLITP G
Sbjct:    1 ASYKVKLITPEG 12          
The following BLAST results are available for this feature:
BLAST of CK739706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_MAIZE5.924e-2962.07Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]
FER1_ORYSJ5.949e-2960.47Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_ORYSI5.949e-2960.47Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER_HORVU6.098e-2963.22Ferredoxin OS=Hordeum vulgare PE=1 SV=1[more]
FER_MEDSA7.941e-2965.52Ferredoxin OS=Medicago sativa PE=1 SV=1[more]
FERB_ALOMA7.941e-2964.77Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_PANGI1.034e-2864.13Ferredoxin OS=Panax ginseng PE=1 SV=1[more]
FER_SOLAB1.346e-2864.37Ferredoxin OS=Solanum abutiloides PE=1 SV=1[more]
FER_CHLFR2.020e-2870.73Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
FER_TOBAC2.283e-2860.22Ferredoxin OS=Nicotiana tabacum PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739706 ID=CK739706; Name=CK739706; organism=Citrus sinensis; type=EST; length=612bp
CTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCTTAAAGCCAA
CAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACAAAGTCAAGC
TCATTACACCCCGAGGGAGAGCAAGAAATTGAGTGTCCTGATGACACATA
TATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGCA
GGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTGGTAGTGTT
GACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGATGCAGGTTA
TGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGTTGAGACAC
ACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATATAACATGGA
GAATTTTGATATTATTATTATTAATATTGTGTATGGGGTTGGTAATTTAG
TGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGAATGAGTA
ATATGAAAAGGGGGATTTTGCTCTGTACTTCCATTTGCTGTCACAAATGA
AGTTGTTGTAGCTTTACCATAATAAAGATAGAATCATCTCTTCTATAAAA
AAAAAAAAAAAA
back to top