CK739706

Overview
NameCK739706
Unique NameCK739706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.446e-28
Identity = 55/93 (59.14%), Postives = 72/93 (77.42%), Query Frame = 2
Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            K + + P G + I CP DTY+LDAAED G+DLPYSCRAG+CS+CAGK            FL+++Q++AG+VLTCVAYPTSDVT+ETHK+E++S
Sbjct:    5 KVTFVTPSGTKTITCPADTYVLDAAEDTGLDLPYSCRAGACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEEDLS 97          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.779e-28
Identity = 53/86 (61.63%), Postives = 65/86 (75.58%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            PEGE E++ PDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+D Q+  G+VLTCVAYPTSDV +ETHK++++
Sbjct:   48 PEGEVELQVPDDVYILDYAEEEGIDLPYSCRAGSCSSCAGKVVSGSLDQSDQSFLDDSQVADGWVLTCVAYPTSDVVIETHKEDDL 133          

HSP 2 Score: 26.9498 bits (58), Expect = 3.779e-28
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 1
Query:   67 RVIAMATYKVKLITPRG 117
            R+ A ATY VKLITP G
Sbjct:   34 RLRAQATYNVKLITPEG 50          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_CAPAA (Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.040e-28
Identity = 55/92 (59.78%), Postives = 67/92 (72.83%), Query Frame = 2
Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            K   + P+G  E +CPDD YILD AE+AG DLPYSCRAGSCS+CAGK            FL+DDQ++ G+VLTCVAYP SDVT+ETHK+ E+
Sbjct:    4 KVKLITPDGPIEFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAEL 95          

HSP 2 Score: 23.8682 bits (50), Expect = 5.040e-28
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            A+YKVKLITP G
Sbjct:    1 ASYKVKLITPDG 12          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER2_SPIOL (Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.562e-28
Identity = 55/93 (59.14%), Postives = 69/93 (74.19%), Query Frame = 2
Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            K + + P G Q IEC DD YILDAAE+ G+DLPYSCRAG+CS+CAGK            FLED Q++ G+VLTC+AYPT DVT+ETHK+EE++
Sbjct:    4 KVTLVTPSGSQVIECGDDEYILDAAEEKGMDLPYSCRAGACSSCAGKVTSGSVDQSDQSFLEDGQMEEGWVLTCIAYPTGDVTIETHKEEELT 96          

HSP 2 Score: 23.0978 bits (48), Expect = 6.562e-28
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            ATYKV L+TP G
Sbjct:    1 ATYKVTLVTPSG 12          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 7.678e-28
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 2
Query:  128 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            IE PDD YILDAAE+AGIDLPYSCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYPTSD  +ETHK+EE+
Sbjct:   19 IEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.544e-28
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            P+G  E +CPDD YILD AE+ G DLPYSCRAGSCS+CAGK            +L+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:   10 PDGPVEFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELT 96          

HSP 2 Score: 25.0238 bits (53), Expect = 8.544e-28
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            ATYKVKL+TP G
Sbjct:    1 ATYKVKLVTPDG 12          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.544e-28
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            P+G  E +CPDD YILD AE+ G DLPYSCRAGSCS+CAGK            +L+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:   10 PDGPVEFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELT 96          

HSP 2 Score: 25.0238 bits (53), Expect = 8.544e-28
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            ATYKVKL+TP G
Sbjct:    1 ATYKVKLVTPDG 12          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 8.544e-28
Identity = 55/92 (59.78%), Postives = 68/92 (73.91%), Query Frame = 2
Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            K + + P+GE   + PDD YILD+A DAG DLP SCRAG+CSTCAGK            FL+DDQI+AGYVLTC+AYP SDVT+ET+K+EE+
Sbjct:    5 KVTLITPDGEVSYDAPDDEYILDSAGDAGYDLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEEL 96          

HSP 2 Score: 25.0238 bits (53), Expect = 8.544e-28
Identity = 11/13 (84.62%), Postives = 11/13 (84.62%), Query Frame = 1
Query:   79 MATYKVKLITPRG 117
            MATYKV LITP G
Sbjct:    1 MATYKVTLITPDG 13          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER2_PHYAM (Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.003e-27
Identity = 54/93 (58.06%), Postives = 72/93 (77.42%), Query Frame = 2
Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            K + + P G   I CP DTY+LDAAE++G+DLPYSCRAG+CS+CAGK            FLE++Q++AG+VLTCVAYPTSDVT+ETHK+E+++
Sbjct:    5 KVTFVTPSGTNTITCPADTYVLDAAEESGLDLPYSCRAGACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVAYPTSDVTIETHKEEDLT 97          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_DATAR (Ferredoxin OS=Datura arborea PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.448e-27
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            P+G  E +CPDD YILD AE+ G +LPYSCRAGSCS+CAGK            FL+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:   10 PDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELT 96          

HSP 2 Score: 25.0238 bits (53), Expect = 1.448e-27
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            ATYKVKL+TP G
Sbjct:    1 ATYKVKLVTPDG 12          
The following BLAST results are available for this feature:
BLAST of CK739706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_PHYES3.446e-2859.14Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]
FER5_MAIZE3.779e-2861.63Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE... [more]
FER_CAPAA5.040e-2859.78Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=... [more]
FER2_SPIOL6.562e-2859.14Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1[more]
FER_MASLA7.678e-2871.25Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER_DATME8.544e-2860.92Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN8.544e-2860.92Ferredoxin OS=Datura inoxia PE=1 SV=1[more]
FER1_SYNP28.544e-2859.78Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER2_PHYAM1.003e-2758.06Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1[more]
FER_DATAR1.448e-2760.92Ferredoxin OS=Datura arborea PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739706 ID=CK739706; Name=CK739706; organism=Citrus sinensis; type=EST; length=612bp
CTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCTTAAAGCCAA
CAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACAAAGTCAAGC
TCATTACACCCCGAGGGAGAGCAAGAAATTGAGTGTCCTGATGACACATA
TATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGCA
GGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTGGTAGTGTT
GACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGATGCAGGTTA
TGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGTTGAGACAC
ACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATATAACATGGA
GAATTTTGATATTATTATTATTAATATTGTGTATGGGGTTGGTAATTTAG
TGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGAATGAGTA
ATATGAAAAGGGGGATTTTGCTCTGTACTTCCATTTGCTGTCACAAATGA
AGTTGTTGTAGCTTTACCATAATAAAGATAGAATCATCTCTTCTATAAAA
AAAAAAAAAAAA
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