CK739706 | Citrus Genome Database

Overview


Name	CK739706
Unique Name	CK739706
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	612

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_ATRBE (Ferredoxin OS=Atropa belladonna PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.448e-27
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 2

Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            P+G  E +CPDD YILD AE+ G +LPYSCRAGSCS+CAGK            FL+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:   10 PDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELT 96

HSP 2 Score: 25.0238 bits (53), Expect = 1.448e-27
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1

Query:   82 ATYKVKLITPRG 117
            ATYKVKL+TP G
Sbjct:    1 ATYKVKLVTPDG 12

[Close]

BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_PHYAF (Ferredoxin OS=Physalis alkekengi var. francheti PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.448e-27
Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 2

Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            K   + P+G    +CPD+ YILDAAE+ G DLPYSCRAGSCS+CAGK            FL+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    4 KVKLITPDGPVVFDCPDNEYILDAAEEQGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQVADGFVLTCVAYPQSDVTIETHKEEELT 96

HSP 2 Score: 25.409 bits (54), Expect = 1.448e-27
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 1

Query:   82 ATYKVKLITPRG 117
            ATYKVKLITP G
Sbjct:    1 ATYKVKLITPDG 12

[Close]

BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_LEUGL (Ferredoxin OS=Leucaena glauca PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.710e-27
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 2

Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            K   L P+G +E ECPDD YILD AE+ GI+LPYSCRAGSCS+CAGK            FL+D+QI+ G+VLTC AYP SDV +ETHK+EE++
Sbjct:    3 KVKLLTPDGPKEFECPDDVYILDQAEELGIELPYSCRAGSCSSCAGKLVEGDLDQSDQSFLDDEQIEEGWVLTCAAYPRSDVVIETHKEEELT 95

[Close]

BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_DATST (Ferredoxin OS=Datura stramonium PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.886e-27
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 2

Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            P+G  E  CPDD YILD AE+ G DLPYSCRAGSCS+CAGK            +L+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:   10 PDGPVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEELT 96

HSP 2 Score: 25.0238 bits (53), Expect = 1.886e-27
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1

Query:   82 ATYKVKLITPRG 117
            ATYKVKL+TP G
Sbjct:    1 ATYKVKLVTPDG 12

[Close]

BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_DATQU (Ferredoxin OS=Datura quercifolia PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.886e-27
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 2

Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            P+G  E  CPDD YILD AE+ G DLPYSCRAGSCS+CAGK            +L+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:   10 PDGPVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEELT 96

HSP 2 Score: 25.0238 bits (53), Expect = 1.886e-27
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1

Query:   82 ATYKVKLITPRG 117
            ATYKVKL+TP G
Sbjct:    1 ATYKVKLVTPDG 12

[Close]

BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.455e-27
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 2

Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            P+G  E  CPDD YILD AE+ G +LPYSCRAGSCS+CAGK            FL+DDQI  G+VLTCVAYP SDVT+ETHK+E+++
Sbjct:   10 PDGPVEFNCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEDLT 96

HSP 2 Score: 25.0238 bits (53), Expect = 2.455e-27
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1

Query:   82 ATYKVKLITPRG 117
            ATYKVKL+TP G
Sbjct:    1 ATYKVKLVTPDG 12

[Close]

BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.455e-27
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 2

Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            K   + PEG  E  CPDD YILD+AE+ G DLPYSCRAG+CS+CAGK            FL+DDQ+  G+VLTCVAYP S+VT+ETHK++++
Sbjct:    4 KVKLITPEGPVEFNCPDDVYILDSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDL 95

HSP 2 Score: 26.1794 bits (56), Expect = 2.455e-27
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 1

Query:   82 ATYKVKLITPRG 117
            ATYKVKLITP G
Sbjct:    1 ATYKVKLITPEG 12

[Close]

BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_SPIMA (Ferredoxin OS=Spirulina maxima PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.918e-27
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 2

Query:  122 QEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDE 361
            + I+C DDTYILDAAE+AG+DLPYSCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYPTSD T++TH++E
Sbjct:   17 ETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITSGSIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIQTHQEE 96

[Close]

BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_ARCLA (Ferredoxin OS=Arctium lappa PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.918e-27
Identity = 59/94 (62.77%), Postives = 73/94 (77.66%), Query Frame = 2

Query:   92 KSSSLHPEGEQEIECPDDTYILD-AAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            K + + PEG+QE E PDD YILD AAE+ G DLPYSCRAGSCS+CAGK            +L+DDQ++AG+VLTCVAYPTSDVT+ETHK+EE++
Sbjct:    4 KVTLITPEGKQEFEVPDDVYILDHAAEEVG-DLPYSCRAGSCSSCAGKVTAGSVDQSDGSYLDDDQMEAGWVLTCVAYPTSDVTIETHKEEELT 96

[Close]

BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_LYCCN (Ferredoxin OS=Lycium chinense PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.197e-27
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 2

Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            P+G  E +CPDD YILD AE+ G +LPYSCRAGSCS+CAGK            FL+DDQI  G+VLTCVAYP SDVT+ETHK+E ++
Sbjct:   10 PDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEALT 96

HSP 2 Score: 25.0238 bits (53), Expect = 3.197e-27
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1

Query:   82 ATYKVKLITPRG 117
            ATYKVKL+TP G
Sbjct:    1 ATYKVKLVTPDG 12

The following BLAST results are available for this feature:

BLAST of CK739706 vs. ExPASy Swiss-Prot

BLAST of CK739706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109


Match Name	E-value	Identity	Description
FER_ATRBE	1.448e-27	60.92	Ferredoxin OS=Atropa belladonna PE=1 SV=1	[more]
FER_PHYAF	1.448e-27	58.06	Ferredoxin OS=Physalis alkekengi var. francheti PE...	[more]
FER_LEUGL	1.710e-27	59.14	Ferredoxin OS=Leucaena glauca PE=1 SV=1	[more]
FER_DATST	1.886e-27	60.92	Ferredoxin OS=Datura stramonium PE=1 SV=1	[more]
FER_DATQU	1.886e-27	60.92	Ferredoxin OS=Datura quercifolia PE=1 SV=1	[more]
FER1_HYONI	2.455e-27	60.92	Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1	[more]
FER_SOLLY	2.455e-27	56.52	Ferredoxin OS=Solanum lyratum PE=1 SV=1	[more]
FER_SPIMA	2.918e-27	67.50	Ferredoxin OS=Spirulina maxima PE=1 SV=2	[more]
FER_ARCLA	2.918e-27	62.77	Ferredoxin OS=Arctium lappa PE=1 SV=1	[more]
FER_LYCCN	3.197e-27	60.92	Ferredoxin OS=Lycium chinense PE=1 SV=1	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739706 ID=CK739706; Name=CK739706; organism=Citrus sinensis; type=EST; length=612bp
CTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCTTAAAGCCAA
CAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACAAAGTCAAGC
TCATTACACCCCGAGGGAGAGCAAGAAATTGAGTGTCCTGATGACACATA
TATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGCA
GGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTGGTAGTGTT
GACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGATGCAGGTTA
TGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGTTGAGACAC
ACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATATAACATGGA
GAATTTTGATATTATTATTATTAATATTGTGTATGGGGTTGGTAATTTAG
TGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGAATGAGTA
ATATGAAAAGGGGGATTTTGCTCTGTACTTCCATTTGCTGTCACAAATGA
AGTTGTTGTAGCTTTACCATAATAAAGATAGAATCATCTCTTCTATAAAA
AAAAAAAAAAAA