CK739706

Overview
NameCK739706
Unique NameCK739706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER2_HYONI (Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.197e-27
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            P+G  E +CPDD YILD AE+ G +LPYSCRAGSCS+CAGK            FL+DDQ+  G+VLTCVAYP SDVT+ETHK+E+++
Sbjct:   10 PDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVKAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEDLT 96          

HSP 2 Score: 25.0238 bits (53), Expect = 3.197e-27
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            ATYKVKL+TP G
Sbjct:    1 ATYKVKLVTPDG 12          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_SOLNI (Ferredoxin OS=Solanum nigrum PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.162e-27
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            P+G  E +CPDD YILD AE+ G +LPYSCRAGSCS+CAGK            FL+DDQ+  G+VLTCVAYP SDVT+ETHK+E+++
Sbjct:   10 PDGPIEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPKSDVTIETHKEEDLT 96          

HSP 2 Score: 25.0238 bits (53), Expect = 4.162e-27
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            ATYKVKL+TP G
Sbjct:    1 ATYKVKLVTPDG 12          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.056e-27
Identity = 52/87 (59.77%), Postives = 64/87 (73.56%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            P+G  E +CPDD YILD AE+ G +LPYSCRAGSCS+CAGK            FL+DDQ+  G+VLTCVAYP SDV +ETHK+EE++
Sbjct:   10 PDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEELT 96          

HSP 2 Score: 25.0238 bits (53), Expect = 7.056e-27
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            ATYKVKL+TP G
Sbjct:    1 ATYKVKLVTPDG 12          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 8.489e-27
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  119 EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct:   16 KHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 8.489e-27
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  119 EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct:   16 KHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 8.489e-27
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  119 EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct:   16 KHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.448e-26
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 2
Query:  128 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            I+  DDTYILDAAE+ GIDLPYSCRAG+CSTCAGK            FL+DDQI AG+VLTCVAYPTSDVT+ETHK+E++
Sbjct:   19 IDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.448e-26
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 2
Query:  128 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            I+  DDTYILDAAE+ GIDLPYSCRAG+CSTCAGK            FL+DDQI AG+VLTCVAYPTSDVT+ETHK+E++
Sbjct:   19 IDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.891e-26
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 2
Query:  122 QEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDE 361
            + I+C DDTYILDAAE+AG+DLPYSCRAG+CSTCAG             FL+DDQI+AGYVLTCVAYPTSD T++TH++E
Sbjct:   17 ETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEE 96          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.891e-26
Identity = 53/83 (63.86%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKD 358
            P GE+ IECP+DTYILDAAE+AG+DLPYSCRAG+CS+CAGK            FL+D Q+  G+VLTCVAYPTSDVT+ TH++
Sbjct:    8 PSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQE 90          
The following BLAST results are available for this feature:
BLAST of CK739706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_HYONI3.197e-2759.77Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1[more]
FER_SOLNI4.162e-2759.77Ferredoxin OS=Solanum nigrum PE=1 SV=1[more]
FER_SCOJA7.056e-2759.77Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]
FER_NOSMU8.489e-2765.06Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER1_ANASP8.489e-2765.06Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
FER1_ANASO8.489e-2765.06Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]
FER1_SYNP61.448e-2668.75Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE71.448e-2668.75Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]
FER_SPIPL1.891e-2666.25Ferredoxin OS=Spirulina platensis PE=1 SV=2[more]
FER_CHLFU1.891e-2663.86Ferredoxin OS=Chlorella fusca PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739706 ID=CK739706; Name=CK739706; organism=Citrus sinensis; type=EST; length=612bp
CTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCTTAAAGCCAA
CAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACAAAGTCAAGC
TCATTACACCCCGAGGGAGAGCAAGAAATTGAGTGTCCTGATGACACATA
TATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGCA
GGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTGGTAGTGTT
GACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGATGCAGGTTA
TGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGTTGAGACAC
ACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATATAACATGGA
GAATTTTGATATTATTATTATTAATATTGTGTATGGGGTTGGTAATTTAG
TGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGAATGAGTA
ATATGAAAAGGGGGATTTTGCTCTGTACTTCCATTTGCTGTCACAAATGA
AGTTGTTGTAGCTTTACCATAATAAAGATAGAATCATCTCTTCTATAAAA
AAAAAAAAAAAA
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