CK739706

Overview
NameCK739706
Unique NameCK739706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739706_ssr410 microsatellite CK739706_ssr410:410..421. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10455 contig Csv1_Contig10455:519..1128. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.027e-26
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 2
Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            K   + P+G  E  CPDD YILD AE+ G DLPYSCRAG+CS+CAGK            FL+DDQI  G+VLTCVAYP S+VT+ETHK+E +
Sbjct:    4 KVKLITPDGPIEFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEAL 95          

HSP 2 Score: 23.8682 bits (50), Expect = 2.027e-26
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            A+YKVKLITP G
Sbjct:    1 ASYKVKLITPDG 12          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.470e-26
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 2
Query:  128 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            I+ PDD YILDAAE+ G DLP+SCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYPTSDVT++THK+E++
Sbjct:   19 IDVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.213e-26
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            P G++ IECP DTYILDAAE+AG+DLPYSCRAG+CS+CAGK            FL+D Q+  G+VLTCVAYPTSD T++TH++E +
Sbjct:   40 PSGDKTIECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.213e-26
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            P+G+  I  PDD YILD AE+ G+DLPYSCRAG+CSTCAGK            FL+DDQI AGY+LTCVAYPT D  +ETHK+E +
Sbjct:   11 PDGDNVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.213e-26
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 2
Query:  119 EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            E  I+ PDD YILD AED G+DLPYSCRAG+CSTCAGK            FL+DDQI+ GYVLTCVAYPTSD+ +ETHK+E++
Sbjct:   16 ETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.186e-26
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 2
Query:  128 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            IE PDD YILDAAE+ GIDLPYSCRAG+CSTCAGK            FL+DDQI AGYVLTCVAYPTSD T+ TH++E++
Sbjct:   19 IEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_DUNSA (Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.186e-26
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            P GEQ++E   D+YILDAAE+AG+DLPYSCRAGSCS+CAGK            FL+DDQ+D+G+VLTCVAY TSD T+ TH++E +
Sbjct:    9 PSGEQKVEVSPDSYILDAAEEAGVDLPYSCRAGSCSSCAGKVESGTVDQSDQSFLDDDQMDSGFVLTCVAYATSDCTIVTHQEENL 94          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER3_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.385e-26
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 2
Query:  119 EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            ++ IECPDD YILDAAE+ G+DLPYSCRAG+CSTCAGK            FL+DDQ+ AG+VLTCVAYPTS+ T+ TH++E +
Sbjct:   15 DETIECPDDQYILDAAEEQGLDLPYSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQVKAGFVLTCVAYPTSNATILTHQEESL 97          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.601e-25
Identity = 53/82 (64.63%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  122 QEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            + IE PDD YILD AE+ GIDLPYSCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYP SD T+ TH++EE+
Sbjct:   17 ETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEEL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.601e-25
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 2
Query:  128 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            IECPDD YILDAAE+ GIDLPYSCRAG+CSTCAGK            FL+D Q+ AGYVLTCVAYP+SD TV+TH++E +
Sbjct:   19 IECPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSDCTVKTHQEESL 98          
The following BLAST results are available for this feature:
BLAST of CK739706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SOLLS2.027e-2657.61Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER1_ANAVT2.470e-2666.25Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER_CHLRE4.213e-2660.47Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER_APHSA4.213e-2660.47Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER1_NOSMU4.213e-2663.86Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER1_PLEBO7.186e-2667.50Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]
FER1_DUNSA7.186e-2660.47Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1[more]
FER3_CYACA9.385e-2661.45Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER_SYNP41.601e-2564.63Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FER1_CYAPA1.601e-2566.25Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739706 ID=CK739706; Name=CK739706; organism=Citrus sinensis; type=EST; length=612bp
CTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCTTAAAGCCAA
CAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACAAAGTCAAGC
TCATTACACCCCGAGGGAGAGCAAGAAATTGAGTGTCCTGATGACACATA
TATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGCA
GGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTGGTAGTGTT
GACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGATGCAGGTTA
TGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGTTGAGACAC
ACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATATAACATGGA
GAATTTTGATATTATTATTATTAATATTGTGTATGGGGTTGGTAATTTAG
TGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGAATGAGTA
ATATGAAAAGGGGGATTTTGCTCTGTACTTCCATTTGCTGTCACAAATGA
AGTTGTTGTAGCTTTACCATAATAAAGATAGAATCATCTCTTCTATAAAA
AAAAAAAAAAAA
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