CK739706

Overview
NameCK739706
Unique NameCK739706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739706_ssr410 microsatellite CK739706_ssr410:410..421. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10455 contig Csv1_Contig10455:519..1128. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.091e-25
Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 2
Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            K   L P+GE+ IE PDD +ILDA E+AG+DLPYSCRAG+CS+C GK            FL+DDQ+  G+VLTCVAYP  D+T+ETH +E++
Sbjct:    4 KVKFLTPDGERTIEVPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.091e-25
Identity = 54/93 (58.06%), Postives = 65/93 (69.89%), Query Frame = 2
Query:   92 KSSSLHPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            K   + P+G E E + PDD YILDAAE+AG+DLPYSCRAG+CSTCAGK            FLED   + GYVLTCVAYP SD+ + THK+EE+
Sbjct:    5 KVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_MARPO (Ferredoxin OS=Marchantia polymorpha PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.731e-25
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            P G+  I+  DD YILDAAE+AG+ LPYSCRAG+CS+CAGK            FL+DDQ+D GYVLTC+AYPTSD+T++TH++E +
Sbjct:    9 PTGQSVIDVEDDEYILDAAEEAGLSLPYSCRAGACSSCAGKVTAGEVDQSDESFLDDDQMDEGYVLTCIAYPTSDLTIDTHQEEAL 94          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.251e-25
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 2
Query:   92 KSSSLHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            K + + P+GE  I+ P+D YILD AE+ G+DLP+SCRAG+CSTCAGK            FL+DDQI+ G+VLTCVAYP SD  + TH++EE+
Sbjct:    5 KVTLVRPDGETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTHQEEEL 96          

HSP 2 Score: 22.3274 bits (46), Expect = 6.251e-25
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1
Query:   79 MATYKVKLITPRG 117
            MATYKV L+ P G
Sbjct:    1 MATYKVTLVRPDG 13          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.877e-25
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = 2
Query:  110 PEGEQ-EIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            PEGE+ E + PDD YILDAAE AG++LPYSCRAG+CSTCAGK            FL+D Q + GYVLTCV+YP SD  + THK+ ++
Sbjct:   65 PEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151          

HSP 2 Score: 25.409 bits (54), Expect = 7.877e-25
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 1
Query:   70 VIAMATYKVKLITPRG 117
            V AMA YKVKL+ P G
Sbjct:   52 VSAMAVYKVKLVGPEG 67          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.355e-24
Identity = 55/92 (59.78%), Postives = 65/92 (70.65%), Query Frame = 2
Query:   89 TKSSSLHPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDE 361
            T    L  EG ++ I+CPDD YILDAAE+ GIDLPYSCRAG+CSTCAGK            FL+D QI  G+VLTCVAYPTSD T+ TH++E
Sbjct:    3 TYKVKLSGEGVDKTIDCPDDQYILDAAEEQGIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEE 94          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.379e-24
Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 2
Query:  104 LHPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            ++P+GE  IEC +D YILDAAEDAGIDLPYSCRAG+CS+C G             FL+DDQ+  G+ LTC  YPTS+ T+ETHK++++
Sbjct:    8 INPDGEVTIECGEDQYILDAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDDL 95          

HSP 2 Score: 21.557 bits (44), Expect = 1.379e-24
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            ATY VKLI P G
Sbjct:    1 ATYSVKLINPDG 12          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.943e-24
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            P+G++  ECP D+YILD AE+ G++LPYSCRAGSCS+CAGK            FL+DDQ   GY LTCV YPTSDVT++TH + E+
Sbjct:    8 PDGKKSFECPGDSYILDKAEEEGLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESEL 93          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_BRYMA (Ferredoxin OS=Bryopsis maxima PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.943e-24
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 2
Query:  119 EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            E  I+C +D++ILD AE+ GID+P+SCR+GSCSTCAGK            FL+DDQ++ GYVLTCVAYPTSD T+ TH++EEM
Sbjct:   14 EAVIDCDEDSFILDVAEEEGIDIPFSCRSGSCSTCAGKIEGGTVDQSEQTFLDDDQMEEGYVLTCVAYPTSDCTILTHQEEEM 96          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.958e-24
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 2
Query:   92 KSSSLHPEGEQ-EIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            K   + PEGE+ E E  DD +ILDAAE+AG+DLPYSCRAG+CSTCAG+            FLEDD  + G+VLTCVAYP SD  + THK+ E+
Sbjct:    5 KVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97          

HSP 2 Score: 21.557 bits (44), Expect = 3.958e-24
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 1
Query:   82 ATYKVKLITPRG 117
            A YKVKLI P G
Sbjct:    2 AVYKVKLIGPEG 13          
The following BLAST results are available for this feature:
BLAST of CK739706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_GLEJA2.091e-2555.43Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]
FER1_RAPSA2.091e-2558.06Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER_MARPO2.731e-2558.14Ferredoxin OS=Marchantia polymorpha PE=1 SV=1[more]
FER_SYNLI6.251e-2554.35Ferredoxin OS=Synechococcus lividus PE=1 SV=2[more]
FER3_MAIZE7.877e-2557.47Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER_GUITH1.355e-2459.78Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]
FER_EUGVI1.379e-2455.68Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER_PERBI3.943e-2456.98Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]
FER_BRYMA3.943e-2459.04Ferredoxin OS=Bryopsis maxima PE=1 SV=1[more]
FER2_RAPSA3.958e-2455.91Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739706 ID=CK739706; Name=CK739706; organism=Citrus sinensis; type=EST; length=612bp
CTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCTTAAAGCCAA
CAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACAAAGTCAAGC
TCATTACACCCCGAGGGAGAGCAAGAAATTGAGTGTCCTGATGACACATA
TATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGCA
GGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTGGTAGTGTT
GACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGATGCAGGTTA
TGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGTTGAGACAC
ACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATATAACATGGA
GAATTTTGATATTATTATTATTAATATTGTGTATGGGGTTGGTAATTTAG
TGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGAATGAGTA
ATATGAAAAGGGGGATTTTGCTCTGTACTTCCATTTGCTGTCACAAATGA
AGTTGTTGTAGCTTTACCATAATAAAGATAGAATCATCTCTTCTATAAAA
AAAAAAAAAAAA
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