CK739706

Overview
NameCK739706
Unique NameCK739706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.150e-24
Identity = 53/93 (56.99%), Postives = 63/93 (67.74%), Query Frame = 2
Query:   92 KSSSLHPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            K   L P+G E E E  DD YILDAAE+AG+DLPYSCRAG+CSTCAG+            FLED  ++ GYVLTCVAYP SD  + THK+ E+
Sbjct:   62 KVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 6.726e-24
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 2
Query:  125 EIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            EI CP+D YILDAAE+ GIDLPYSCRAG+CSTCAGK            FL+D+QI  G+VLTCVAYPTS+ T+ TH++E +
Sbjct:   18 EINCPNDQYILDAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEAL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.784e-24
Identity = 48/80 (60.00%), Postives = 62/80 (77.50%), Query Frame = 2
Query:  128 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            I+CPDD +ILDAAE+ GI+LPYSCRAG+CSTCAGK            FL+DDQ+ AG++LTCVAYPTSD  V+TH ++++
Sbjct:   18 IKCPDDQFILDAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDL 97          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_PORYE (Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.498e-23
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 2
Query:  134 CPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            C +DTYILDAAE+ GI+LPYSCRAG+CSTCAGK            FL+DDQ+ AGYVLTC+AYP+SD T+ TH ++E+
Sbjct:   21 CAEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQADQSFLDDDQLLAGYVLTCIAYPSSDCTISTHVEQEL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER2_DUNSA (Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.498e-23
Identity = 50/86 (58.14%), Postives = 61/86 (70.93%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            P G+Q IE   D YILDAAE+AG+DLPYSCRAG+CS+CAGK            FL+DDQ   G+VLTCVAY TSD T+ TH++E +
Sbjct:    9 PSGDQTIEVSPDAYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTIDQSDQSFLDDDQQGRGFVLTCVAYATSDCTISTHQEESL 94          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_THAWE (Ferredoxin OS=Thalassiosira weissflogii GN=petF PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.957e-23
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 2
Query:  128 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            I+C DD ++LDAAE+AGIDLPYSCRAG+CSTCAGK            FL+DDQ+ AG+VLTC+AYP SD T+  H+++E+
Sbjct:   19 IDCNDDVFVLDAAEEAGIDLPYSCRAGACSTCAGKVTEGTIDQSEQTFLDDDQMGAGFVLTCIAYPKSDCTILVHQEDEL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.360e-23
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 2
Query:  128 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            I CP D YILDAAE+ G+DLPYSCRAG+CSTCAGK            FL+++QI+ G++LTCVAYPTSD  ++TH++E +
Sbjct:   17 INCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEAL 96          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.436e-23
Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 2
Query:  110 PEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            P+G E E E PDDTYIL+AAE AG++LP+SCRAGSCSTCAG+            FL+D Q+  GY+LTC++YP +D  + THK+E++
Sbjct:   68 PDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 9.351e-23
Identity = 49/93 (52.69%), Postives = 66/93 (70.97%), Query Frame = 2
Query:   92 KSSSLHPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            K + + P+G E  I+ P+D YILD AE+ G+DLP+SCRAG+CSTCAGK            FL+DDQI+ G+VLTCVAYP SD  + T+++EE+
Sbjct:    5 KVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          

HSP 2 Score: 22.3274 bits (46), Expect = 9.351e-23
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1
Query:   79 MATYKVKLITPRG 117
            MATYKV L+ P G
Sbjct:    1 MATYKVTLVRPDG 13          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 9.351e-23
Identity = 49/93 (52.69%), Postives = 66/93 (70.97%), Query Frame = 2
Query:   92 KSSSLHPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            K + + P+G E  I+ P+D YILD AE+ G+DLP+SCRAG+CSTCAGK            FL+DDQI+ G+VLTCVAYP SD  + T+++EE+
Sbjct:    5 KVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          

HSP 2 Score: 22.3274 bits (46), Expect = 9.351e-23
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1
Query:   79 MATYKVKLITPRG 117
            MATYKV L+ P G
Sbjct:    1 MATYKVTLVRPDG 13          
The following BLAST results are available for this feature:
BLAST of CK739706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER3_ARATH5.150e-2456.99Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER1_CYACA6.726e-2461.73Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER_BUMFI8.784e-2460.00Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]
FER_PORYE1.498e-2361.54Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1[more]
FER2_DUNSA1.498e-2358.14Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1[more]
FER_THAWE1.957e-2358.75Ferredoxin OS=Thalassiosira weissflogii GN=petF PE... [more]
FER2_CYACA4.360e-2357.50Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER6_MAIZE7.436e-2354.02Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER_THEVL9.351e-2352.69Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB9.351e-2352.69Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739706 ID=CK739706; Name=CK739706; organism=Citrus sinensis; type=EST; length=612bp
CTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCTTAAAGCCAA
CAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACAAAGTCAAGC
TCATTACACCCCGAGGGAGAGCAAGAAATTGAGTGTCCTGATGACACATA
TATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGCA
GGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTGGTAGTGTT
GACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGATGCAGGTTA
TGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGTTGAGACAC
ACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATATAACATGGA
GAATTTTGATATTATTATTATTAATATTGTGTATGGGGTTGGTAATTTAG
TGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGAATGAGTA
ATATGAAAAGGGGGATTTTGCTCTGTACTTCCATTTGCTGTCACAAATGA
AGTTGTTGTAGCTTTACCATAATAAAGATAGAATCATCTCTTCTATAAAA
AAAAAAAAAAAA
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