CK739706

Overview
NameCK739706
Unique NameCK739706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 9.351e-23
Identity = 49/93 (52.69%), Postives = 66/93 (70.97%), Query Frame = 2
Query:   92 KSSSLHPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            K + + P+G E  I+ P+D YILD AE+ G+DLP+SCRAG+CSTCAGK            FL+DDQI+ G+VLTCVAYP SD  + T+++EE+
Sbjct:    5 KVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          

HSP 2 Score: 22.3274 bits (46), Expect = 9.351e-23
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1
Query:   79 MATYKVKLITPRG 117
            MATYKV L+ P G
Sbjct:    1 MATYKVTLVRPDG 13          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.712e-23
Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            P G +EIE  + TY+LD+AED GIDLPYSCRAG+CSTCAG             FL+DDQ++  +VLTCVAYPTSD  ++TH++E++
Sbjct:   11 PGGVEEIEGDETTYVLDSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEKL 96          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_PORPU (Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 9.712e-23
Identity = 47/79 (59.49%), Postives = 60/79 (75.95%), Query Frame = 2
Query:  131 ECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            +C +DTYILDAAE+AGI+LPYSCRAG+CSTCAGK            FL+D+Q+  GYVLTC+AYP SD T+ TH ++E+
Sbjct:   20 DCSEDTYILDAAEEAGIELPYSCRAGACSTCAGKVTEGSVDQSDQSFLDDEQLLKGYVLTCIAYPESDCTILTHVEQEL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_ODOSI (Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.268e-22
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 2
Query:  128 IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            I+C DD ++LDAAE+ GI+LPYSCRAG+CSTCAGK            FL+DDQ+ AG+VLTC+AYP SD TV  H+++E+
Sbjct:   19 IDCNDDVFLLDAAEEQGIELPYSCRAGACSTCAGKVTEGDIDQSEQTFLDDDQVGAGFVLTCIAYPKSDCTVLVHQEDEL 98          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_PHYPA (Ferredoxin, chloroplastic OS=Physcomitrella patens GN=PETF PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.995e-22
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  119 EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            E   EC D+ Y LDAAE AG+DLPYSCRAG+CS+CAG             FL+D QID G+VLTCVAYP SD  + TH++E M
Sbjct:   63 ENVXECSDEEYXLDAAERAGMDLPYSCRAGACSSCAGIIKAGEVDQSDQSFLDDSQIDDGFVLTCVAYPASDCIIXTHQEENM 145          

HSP 2 Score: 25.0238 bits (53), Expect = 1.995e-22
Identity = 14/32 (43.75%), Postives = 18/32 (56.25%), Query Frame = 1
Query:   34 FGLKANNNRGGRVIAMATYKVKLITPRGRARN 129
            FGLK+ +   GR+  MATYKV  +     A N
Sbjct:   35 FGLKSRSM--GRLTCMATYKVTFLDGETGAEN 64          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER_PORUM (Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.820e-22
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 2
Query:  131 ECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            +C +DTYILDAAE+ GI+LPYSCRAG+CSTCAGK            FL+D+Q+  GYVLTC+AYP SD T+ TH ++E+
Sbjct:   19 DCSEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDEQMLKGYVLTCIAYPESDCTILTHVEQEL 97          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 7.431e-22
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 2
Query:   92 KSSSLHPEGE-QEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            K   + PEGE QEIE  +D  IL++AE+AG++LPYSCR+G+C TC GK            FLE++QI  GY+LTC+A P  D  V THK  ++
Sbjct:   55 KVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          

HSP 2 Score: 29.261 bits (64), Expect = 7.431e-22
Identity = 13/28 (46.43%), Postives = 18/28 (64.29%), Query Frame = 1
Query:   34 FGLKANNNRGGRVIAMATYKVKLITPRG 117
            FGL ++    G+V A  + KVKLI+P G
Sbjct:   36 FGLSSSRGNFGKVFAKESRKVKLISPEG 63          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 8.222e-22
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 2
Query:  119 EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 370
            ++ IE PDD YILDAAE+AG+DLP+SCR+GSCS+C G             FL+DDQI AG VLTCVAYPTS+  +ETH+++ ++
Sbjct:   16 DETIEVPDDEYILDAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHREDAIA 99          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_EQUTE (Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.832e-21
Identity = 45/86 (52.33%), Postives = 61/86 (70.93%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            P GE  ++ P+ T ILDAAE+AG DLP+SCRAG+CS+C GK            FL+D Q++ G+VLTC+A P SD+ +ETHK+EE+
Sbjct:    9 PSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDQSEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
BLAST of CK739706 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.832e-21
Identity = 45/86 (52.33%), Postives = 61/86 (70.93%), Query Frame = 2
Query:  110 PEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 367
            P GE  ++ P+ T ILDAAE+AG DLP+SCRAG+CS+C GK            FL+D Q++ G+VLTC+A P SD+ +ETHK+EE+
Sbjct:    9 PSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
The following BLAST results are available for this feature:
BLAST of CK739706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SYNEN9.351e-2352.69Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER_RHOPL9.712e-2355.81Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER_PORPU9.712e-2359.49Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2[more]
FER_ODOSI1.268e-2257.50Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2[more]
FER_PHYPA1.995e-2256.63Ferredoxin, chloroplastic OS=Physcomitrella patens... [more]
FER_PORUM4.820e-2258.23Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV... [more]
FER4_ARATH7.431e-2248.39Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]
FER2_NOSMU8.222e-2255.95Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]
FER1_EQUTE1.832e-2152.33Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1[more]
FER1_EQUAR1.832e-2152.33Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739706 ID=CK739706; Name=CK739706; organism=Citrus sinensis; type=EST; length=612bp
CTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCTTAAAGCCAA
CAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACAAAGTCAAGC
TCATTACACCCCGAGGGAGAGCAAGAAATTGAGTGTCCTGATGACACATA
TATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGCA
GGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTGGTAGTGTT
GACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGATGCAGGTTA
TGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGTTGAGACAC
ACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATATAACATGGA
GAATTTTGATATTATTATTATTAATATTGTGTATGGGGTTGGTAATTTAG
TGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGAATGAGTA
ATATGAAAAGGGGGATTTTGCTCTGTACTTCCATTTGCTGTCACAAATGA
AGTTGTTGTAGCTTTACCATAATAAAGATAGAATCATCTCTTCTATAAAA
AAAAAAAAAAAA
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