CK739709

Overview
NameCK739709
Unique NameCK739709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7050 contig Csv1_Contig7050:596..1084. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739709 vs. ExPASy Swiss-Prot
Match: ACSF_SYNS3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Synechococcus sp. (strain CC9311) GN=acsF PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.329e-42
Identity = 73/122 (59.84%), Postives = 94/122 (77.05%), Query Frame = 1
Query:  124 RLDTWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEF 489
            ++  WRYITI+RHL+ NP+ + +PIF +FENWCQDENRHGDFF ALMKAQP+ +   +A+LW RFF L+V+ TMY+ D  R  FYE +GLD +E+D  VI +TN  TAR+FP VLDV+NP F
Sbjct:  178 KIGYWRYITIFRHLEQNPDSKIFPIFNFFENWCQDENRHGDFFDALMKAQPETVRGLRARLWCRFFLLAVFATMYVRDVARKEFYEALGLDAREYDRLVIDKTNENTARVFPVVLDVKNPRF 299          

HSP 2 Score: 80.8777 bits (198), Expect = 3.392e-15
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 3
Query:    3 FLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIG---YLEIHYHIQTSQGQP*VPMLSHFQ 203
            FLNK +SDF   LDLGFLT ++ YTFFKPKFIFYATYLSEKIG   Y+ I  H++ +      P+ + F+
Sbjct:  138 FLNKSMSDFGLQLDLGFLTSSKSYTFFKPKFIFYATYLSEKIGYWRYITIFRHLEQNPDSKIFPIFNFFE 207          
BLAST of CK739709 vs. ExPASy Swiss-Prot
Match: ACSF_RHOP2 (Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Rhodopseudomonas palustris (strain HaA2) GN=acsF PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.749e-42
Identity = 55/117 (47.01%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  139 RYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEF 489
            RYITIYR ++ +PE + +PIFK+FE WC DE RHG+ F+ LM+A P  L+    KLW RFF L+V+ TMY+ D  R AFYE +G+D  E+ M V   T   + ++FP  +++++P F
Sbjct:  188 RYITIYRQMERHPERRFHPIFKWFERWCNDEFRHGEAFALLMRADPSLLSGVN-KLWIRFFLLAVFATMYVRDHMRPAFYEALGMDAAEYGMQVFRITTEISKQVFPVTINLDDPRF 303          

HSP 2 Score: 68.5514 bits (166), Expect = 4.749e-42
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 3
Query:    3 FLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGY 134
            F+N+ L D    +DL FLTK +KYT+F+PKFIFYATYLSEKIGY
Sbjct:  143 FINEILKDHGIGVDLSFLTKVKKYTYFRPKFIFYATYLSEKIGY 186          
BLAST of CK739709 vs. ExPASy Swiss-Prot
Match: ACSF_SYNR3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Synechococcus sp. (strain RCC307) GN=acsF PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.260e-41
Identity = 71/122 (58.20%), Postives = 95/122 (77.87%), Query Frame = 1
Query:  124 RLDTWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEF 489
            ++  WRYI IYRHL+ NP+ + +PIF +FENWCQDENRHGDFF ALMKAQP  +   +A+LW RFF L+V+ TMY+ D  R  FYE +GLD +E+D +VI +TN T+AR+FP VL+V++P+F
Sbjct:  178 KIGYWRYIAIYRHLEQNPDSKIFPIFNFFENWCQDENRHGDFFDALMKAQPSSVRGLQARLWCRFFLLAVFATMYVRDVARKEFYEALGLDAREYDKYVIAKTNETSARVFPVVLNVDHPKF 299          

HSP 2 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 3
Query:    3 FLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIG---YLEIHYHIQTSQGQP*VPMLSHFQ 203
            FLNK + DF   LDLGFLT  + YTFFKPKFIFYATYLSEKIG   Y+ I+ H++ +      P+ + F+
Sbjct:  138 FLNKAMGDFGVQLDLGFLTANKAYTFFKPKFIFYATYLSEKIGYWRYIAIYRHLEQNPDSKIFPIFNFFE 207          
BLAST of CK739709 vs. ExPASy Swiss-Prot
Match: ACSF_RHOPT (Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Rhodopseudomonas palustris (strain TIE-1) GN=acsF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.324e-41
Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  139 RYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEF 489
            RYITIYR ++ +PE + +PIFK+FE WC DE RHG+ F+ LM+A P  L+    KLW RFF L+V+ TMY+ D  R AFYE +G+D  ++ M V   T   + ++FP  +++++P F
Sbjct:  188 RYITIYRQMERHPERRFHPIFKWFERWCNDEFRHGEAFALLMRADPSLLSGVN-KLWIRFFLLAVFSTMYVRDHMRPAFYEALGVDATDYGMQVFRITTEISKQVFPVTINLDDPRF 303          

HSP 2 Score: 68.5514 bits (166), Expect = 2.324e-41
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 3
Query:    3 FLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGY 134
            F+N+ L D    +DL FLTK +KYT+F+PKFIFYATYLSEKIGY
Sbjct:  143 FINEILKDHGIGVDLSFLTKVKKYTYFRPKFIFYATYLSEKIGY 186          
BLAST of CK739709 vs. ExPASy Swiss-Prot
Match: ACSF_RHOPA (Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Rhodopseudomonas palustris GN=acsF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.324e-41
Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  139 RYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEF 489
            RYITIYR ++ +PE + +PIFK+FE WC DE RHG+ F+ LM+A P  L+    KLW RFF L+V+ TMY+ D  R AFYE +G+D  ++ M V   T   + ++FP  +++++P F
Sbjct:  188 RYITIYRQMERHPERRFHPIFKWFERWCNDEFRHGEAFALLMRADPSLLSGVN-KLWIRFFLLAVFSTMYVRDHMRPAFYEALGVDATDYGMQVFRITTEISKQVFPVTINLDDPRF 303          

HSP 2 Score: 68.5514 bits (166), Expect = 2.324e-41
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 3
Query:    3 FLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGY 134
            F+N+ L D    +DL FLTK +KYT+F+PKFIFYATYLSEKIGY
Sbjct:  143 FINEILKDHGIGVDLSFLTKVKKYTYFRPKFIFYATYLSEKIGY 186          
BLAST of CK739709 vs. ExPASy Swiss-Prot
Match: ACSF_SYNPX (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Synechococcus sp. (strain WH8102) GN=acsF PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.806e-41
Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 1
Query:  124 RLDTWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEF 489
            ++  WRYI IYRHL+ NPE + +PIF +FENWCQDENRHGDFF ALMK+QP  +    AKLW RFF L+V+ TMY+ D  R  FYE +GLD + +D  VI +TN TTAR+FP VLDV NP+F
Sbjct:  174 KIGYWRYIAIYRHLEKNPESKIFPIFNFFENWCQDENRHGDFFDALMKSQPDTVRGPIAKLWCRFFLLAVFATMYVRDVARKEFYEALGLDARTYDKMVIEKTNETTARVFPVVLDVNNPKF 295          

HSP 2 Score: 78.1814 bits (191), Expect = 2.198e-14
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 3
Query:    3 FLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIG---YLEIHYHIQTSQGQP*VPMLSHFQ 203
            FLNK +SDF   LDLGFLT  + YTFF+PKFIFYATYLSEKIG   Y+ I+ H++ +      P+ + F+
Sbjct:  134 FLNKAMSDFGMQLDLGFLTANKDYTFFQPKFIFYATYLSEKIGYWRYIAIYRHLEKNPESKIFPIFNFFE 203          
BLAST of CK739709 vs. ExPASy Swiss-Prot
Match: ACSF1_THEEB (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=acsF1 PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.066e-40
Identity = 79/167 (47.31%), Postives = 105/167 (62.87%), Query Frame = 1
Query:   73 THFSSQSLSFMPHIYLRRLDTWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLND----WK------------------------AKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEF 489
            T+F  + + +  ++   ++  WRYITIYRHL+ +PE + YPIF++FENWCQDENRHGDFF A+M+AQPQ L+     W+                         KLW RFF LSV+ TMYLND QR  FY  +GLD +E+D  VI +TN T  R+FP +LDV++PEF
Sbjct:  160 TYFEPEFIFYATYLS-EKIGYWRYITIYRHLEKHPEHRIYPIFRFFENWCQDENRHGDFFDAVMRAQPQMLDRPRTFWQKIKEIPLSLSGKKWARYFMVCWVPPKLWCRFFLLSVFATMYLNDLQRAKFYTALGLDAREYDREVIAKTNETAGRVFPVILDVDHPEF 325          

HSP 2 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 3
Query:    3 FLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIG---YLEIHYHIQTSQGQP*VPMLSHFQ 203
            FLNK ++DFN +LDLGFLT+ R YT+F+P+FIFYATYLSEKIG   Y+ I+ H++        P+   F+
Sbjct:  136 FLNKAMADFNLSLDLGFLTQHRSYTYFEPEFIFYATYLSEKIGYWRYITIYRHLEKHPEHRIYPIFRFFE 205          
BLAST of CK739709 vs. ExPASy Swiss-Prot
Match: ACSF_SYNSC (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Synechococcus sp. (strain CC9605) GN=acsF PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 6.912e-40
Identity = 72/122 (59.02%), Postives = 90/122 (73.77%), Query Frame = 1
Query:  124 RLDTWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEF 489
            ++  WRYI IYRHL+ NP+ + +PIF +FENWCQDENRHGDFF ALMKAQP  +    AKLW RFF L+V+ TMY+ D  R  FYE +GLD + +D  VI +TN T+AR+FP VLDV N +F
Sbjct:  174 KIGYWRYIAIYRHLEKNPDSKIFPIFNFFENWCQDENRHGDFFDALMKAQPDTVRGPIAKLWCRFFLLAVFATMYVRDVARKEFYEALGLDARTYDKMVIEKTNETSARVFPVVLDVNNDKF 295          

HSP 2 Score: 80.1073 bits (196), Expect = 5.785e-15
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 3
Query:    3 FLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIG---YLEIHYHIQTSQGQP*VPMLSHFQ 203
            FLNK +SDF   LDLGFLT  + YTFFKPKFIFYATYLSEKIG   Y+ I+ H++ +      P+ + F+
Sbjct:  134 FLNKSMSDFGMQLDLGFLTANKDYTFFKPKFIFYATYLSEKIGYWRYIAIYRHLEKNPDSKIFPIFNFFE 203          
BLAST of CK739709 vs. ExPASy Swiss-Prot
Match: ACSF1_ANASP (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1 OS=Anabaena sp. (strain PCC 7120) GN=acsF1 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.430e-39
Identity = 69/127 (54.33%), Postives = 95/127 (74.80%), Query Frame = 1
Query:  112 IYL-RRLDTWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEF 489
            +YL  ++  WRYI I+RHL+ +PE Q YPIF+YFE+WCQDENRHGD F AL+++QPQ  N+WKA+LW+RFF LSV+ T  L   +R+ FY+ +GLD  +FD+ V+  TN T  R FP +L+ E+P+F
Sbjct:  164 VYLSEKIGYWRYIIIFRHLEKHPENQFYPIFRYFESWCQDENRHGDIFKALLRSQPQLWNNWKARLWSRFFLLSVFATHTLTVHERSGFYKSLGLDATDFDLQVVRNTNETAGRAFPVMLNTEHPKF 290          
BLAST of CK739709 vs. ExPASy Swiss-Prot
Match: ACSF_RHOGE (Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Rhodocyclus gelatinosus GN=acsF PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.442e-37
Identity = 49/117 (41.88%), Postives = 77/117 (65.81%), Query Frame = 1
Query:  139 RYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEF 489
            RYITIYR L+ +P+ + +PIF++FE WC DE RHG+ F+ +++A P  ++     LW RFF L+VY TMY+ D  R   +E +GL++ ++D  V   TN  + ++FP  LD+++  F
Sbjct:  180 RYITIYRQLERHPDKRFHPIFRWFERWCNDEFRHGESFALILRAHPHLISGANL-LWVRFFLLAVYATMYVRDHMRPQLHEAMGLESTDYDYRVFQITNEISKQVFPISLDIDHQAF 295          

HSP 2 Score: 63.929 bits (154), Expect = 2.442e-37
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 3
Query:    3 FLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGY 134
            F+N+ L DF   ++LG L + + YT+FKPK+IFYATYLSEKIGY
Sbjct:  135 FINQALRDFGLGINLGGLKRTKAYTYFKPKYIFYATYLSEKIGY 178          
The following BLAST results are available for this feature:
BLAST of CK739709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ACSF_SYNS34.329e-4259.84Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_RHOP24.749e-4247.01Aerobic magnesium-protoporphyrin IX monomethyl est... [more]
ACSF_SYNR31.260e-4158.20Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_RHOPT2.324e-4146.15Aerobic magnesium-protoporphyrin IX monomethyl est... [more]
ACSF_RHOPA2.324e-4146.15Aerobic magnesium-protoporphyrin IX monomethyl est... [more]
ACSF_SYNPX2.806e-4160.66Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF1_THEEB1.066e-4047.31Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_SYNSC6.912e-4059.02Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF1_ANASP3.430e-3954.33Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_RHOGE2.442e-3741.88Aerobic magnesium-protoporphyrin IX monomethyl est... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6098 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739709 ID=CK739709; Name=CK739709; organism=Citrus sinensis; type=EST; length=490bp
GGTTTCTGAACAAGGGGCTATCTGATTTCAATTATGCATTGGACTTGGGC
TTCCTGACAAAAGCTAGGAAATACACATTTTTCAAGCCAAAGTTTATCTT
TTATGCCACATATTTATCTGAGAAGATTGGATACCTGGAGATACATTACC
ATATACAGACATCTCAAGGCCAACCCTGAGTTCCAATGTTATCCCATTTT
CAAGTATTTTGAGAACTGGTGCCAGGATGAGAACCGTCACGGTGATTTCT
TCTCAGCCTTGATGAAGGCACAACCCCAGTTCCTCAATGACTGGAAGGCA
AAGTTGTGGGCCCGATTTTTCTGCCTCTCGGTGTATGTCACAATGTATCT
CAATGACTGCCAGCGTACTGCTTTCTATGAGGGCATTGGACTAGACACCA
AAGAATTTGACATGCATGTCATCATTGAGACCAATCGCACAACGGCTAGA
ATTTTCCCTGCTGTGCTGGATGTTGAAAACCCAGAGTTCA
back to top