CK739709

Overview
NameCK739709
Unique NameCK739709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739709 vs. ExPASy Swiss-Prot
Match: ACSF_PROMA (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus GN=acsF PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.069e-28
Identity = 59/127 (46.46%), Postives = 81/127 (63.78%), Query Frame = 1
Query:  112 IYL-RRLDTWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEF 489
            +YL  ++  WRYI I RHLKANP+  C P+F +FE WCQDENRHGD  + +M+  P     ++ KL +RFF  +V++T  L  C+R  FYE +G+D   FD  VII+TN T+   FP V   E+ +F
Sbjct:  171 LYLSEKIGYWRYILINRHLKANPDKVCAPLFDFFEPWCQDENRHGDCINLMMRCWPGMTKGFRGKLLSRFFLWTVFLTHTLTVCERGEFYELLGIDPVLFDEEVIIQTNNTSKNAFPWVYKFEDGKF 297          
BLAST of CK739709 vs. ExPASy Swiss-Prot
Match: ACSF_PROM4 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9211) GN=acsF PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.138e-27
Identity = 56/127 (44.09%), Postives = 81/127 (63.78%), Query Frame = 1
Query:  112 IYL-RRLDTWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEF 489
            +YL  ++  WRYI I RHLKA+P+  C P+F +FE WCQDENRHGD  + +M+  P     ++ K+ +RFF  +V++T  L  C+R  FYE + +D  +FD  VII+TN T+   FP V + E+  F
Sbjct:  173 LYLSEKIGYWRYILINRHLKAHPDKACAPLFDFFEPWCQDENRHGDCINMMMRCWPGMTKGFRGKILSRFFLWTVFLTHTLTVCERGDFYELLAIDPVKFDEEVIIQTNNTSKNAFPWVYNFEDGRF 299          
BLAST of CK739709 vs. ExPASy Swiss-Prot
Match: ACSF_PROMM (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9313) GN=acsF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.550e-26
Identity = 57/127 (44.88%), Postives = 79/127 (62.20%), Query Frame = 1
Query:  112 IYL-RRLDTWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEF 489
            +YL  ++  WRYI I RHL  NPE  C P+F +FE WCQDENRHGD  + +M+  P     ++ KL +RFF  SV++T  L  C+R  FY  +G+D   FD  VII+TN T+   FP V + ++ +F
Sbjct:  173 LYLSEKIGYWRYILINRHLNDNPEKVCAPLFDFFEPWCQDENRHGDCINLMMRCWPGMTKGFRGKLLSRFFLWSVFLTHTLTVCERGDFYGLLGIDPVLFDEEVIIQTNNTSRNAFPWVYNFDDGKF 299          
BLAST of CK739709 vs. ExPASy Swiss-Prot
Match: ACSF_PROM3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9303) GN=acsF PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.330e-26
Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = 1
Query:  112 IYL-RRLDTWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEF 489
            +YL  ++  WRYI I RHL  NPE  C P+F +FE WCQDENRHGD  + +M+  P     ++ KL +RFF  SV++T  L  C+R  FY  +G+D   FD  VI++TN T+   FP V + ++ +F
Sbjct:  173 LYLSEKIGYWRYILINRHLNDNPEKVCAPLFDFFEPWCQDENRHGDCINLMMRCWPGMTKGFRGKLLSRFFLWSVFLTHTLTVCERGDFYGLLGIDPVLFDEEVIVQTNNTSRNAFPWVYNFDDGKF 299          
The following BLAST results are available for this feature:
BLAST of CK739709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ACSF_PROMA6.069e-2846.46Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROM45.138e-2744.09Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROMM2.550e-2644.88Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROM33.330e-2644.09Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6098 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739709 ID=CK739709; Name=CK739709; organism=Citrus sinensis; type=EST; length=490bp
GGTTTCTGAACAAGGGGCTATCTGATTTCAATTATGCATTGGACTTGGGC
TTCCTGACAAAAGCTAGGAAATACACATTTTTCAAGCCAAAGTTTATCTT
TTATGCCACATATTTATCTGAGAAGATTGGATACCTGGAGATACATTACC
ATATACAGACATCTCAAGGCCAACCCTGAGTTCCAATGTTATCCCATTTT
CAAGTATTTTGAGAACTGGTGCCAGGATGAGAACCGTCACGGTGATTTCT
TCTCAGCCTTGATGAAGGCACAACCCCAGTTCCTCAATGACTGGAAGGCA
AAGTTGTGGGCCCGATTTTTCTGCCTCTCGGTGTATGTCACAATGTATCT
CAATGACTGCCAGCGTACTGCTTTCTATGAGGGCATTGGACTAGACACCA
AAGAATTTGACATGCATGTCATCATTGAGACCAATCGCACAACGGCTAGA
ATTTTCCCTGCTGTGCTGGATGTTGAAAACCCAGAGTTCA
back to top