CK739717

Overview
NameCK739717
Unique NameCK739717
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:92..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739717 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.639e-39
Identity = 74/97 (76.29%), Postives = 82/97 (84.54%), Query Frame = 3
Query:  159 ATYKVKLITPGGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 449
            ATYKVKL+TP G  E +CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQM EGFVLTC AYP SDVTIETHKEEEL G
Sbjct:    1 ATYKVKLVTPDGPVEFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CK739717 vs. ExPASy Swiss-Prot
Match: FER_HORVU (Ferredoxin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.034e-38
Identity = 74/95 (77.89%), Postives = 83/95 (87.37%), Query Frame = 3
Query:  159 ATYKVKLITPGGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 443
            ATYKVKL+TP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GK+VSG +DQS+QSFLDDDQM EG+VLTCAAYP SDV IETHKEEEL
Sbjct:    1 ATYKVKLVTPEGEVELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEEL 95          
BLAST of CK739717 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.350e-38
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 3
Query:  159 ATYKVKLITPGGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 449
            ATYKVKLITP G  E NCPDD +ILD+AEE G DLPYSCRAGACSSC GK+ +G VDQS+ SFLDDDQ+ EGFVLTC AYP S+VTIETHKE++L G
Sbjct:    1 ATYKVKLITPEGPVEFNCPDDVYILDSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDLVG 97          
BLAST of CK739717 vs. ExPASy Swiss-Prot
Match: FER_DATAR (Ferredoxin OS=Datura arborea PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.350e-38
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 3
Query:  159 ATYKVKLITPGGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 449
            ATYKVKL+TP G  E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQM +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:    1 ATYKVKLVTPDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CK739717 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.303e-38
Identity = 74/97 (76.29%), Postives = 81/97 (83.51%), Query Frame = 3
Query:  159 ATYKVKLITPGGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 449
            A+YKVKLITP G  E NCPDD +ILD AEE G DLPYSCRAGACSSC GK+V G+VDQS+ SFLDDDQ+G GFVLTC AYP S+VTIETHKEE L G
Sbjct:    1 ASYKVKLITPDGPIEFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEALVG 97          
BLAST of CK739717 vs. ExPASy Swiss-Prot
Match: FER_ATRBE (Ferredoxin OS=Atropa belladonna PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.303e-38
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 3
Query:  159 ATYKVKLITPGGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 449
            ATYKVKL+TP G  E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQM +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:    1 ATYKVKLVTPDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CK739717 vs. ExPASy Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.303e-38
Identity = 83/142 (58.45%), Postives = 102/142 (71.83%), Query Frame = 3
Query:   18 MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAMFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 443
            MAT+ S+  + +F      + SL+A P    AM         R+ A ATY VKLITP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG++DQS+QSFLDD Q+ +G+VLTC AYPTSDV IETHKE++L
Sbjct:    1 MATVLSSPRAPAF------SFSLRAAPATTVAM---TRGASSRLRAQATYNVKLITPEGEVELQVPDDVYILDYAEEEGIDLPYSCRAGSCSSCAGKVVSGSLDQSDQSFLDDSQVADGWVLTCVAYPTSDVVIETHKEDDL 133          
BLAST of CK739717 vs. ExPASy Swiss-Prot
Match: FER_SOLNI (Ferredoxin OS=Solanum nigrum PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.928e-38
Identity = 72/97 (74.23%), Postives = 82/97 (84.54%), Query Frame = 3
Query:  159 ATYKVKLITPGGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 449
            ATYKVKL+TP G  E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQM +GFVLTC AYP SDVTIETHKEE+L G
Sbjct:    1 ATYKVKLVTPDGPIEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPKSDVTIETHKEEDLTG 97          
BLAST of CK739717 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 3.928e-38
Identity = 82/122 (67.21%), Postives = 92/122 (75.41%), Query Frame = 3
Query:   90 AMPNMGQAMFGLK-ANRGGRVVAMAT---YKVKLITPGGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 443
            AM +   A  G K A RG R  +  +   YKV L TP G++ I CP DT+ILDAAEEAGLDLPYSCRAGACSSC GKV +GTVDQS+QSFLDD QMG GFVLTC AYPTSD TI+TH+EE L
Sbjct:    4 AMRSTFAARVGAKPAVRGARPASRMSCMAYKVTLKTPSGDKTIECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125          
BLAST of CK739717 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.928e-38
Identity = 72/97 (74.23%), Postives = 82/97 (84.54%), Query Frame = 3
Query:  159 ATYKVKLITPGGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 449
            ATYKVKL+TP G  E NCPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEE+L G
Sbjct:    1 ATYKVKLVTPDGPVEFNCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEDLTG 97          
The following BLAST results are available for this feature:
BLAST of CK739717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER_DATIN4.639e-3976.29Ferredoxin OS=Datura inoxia PE=1 SV=1[more]
FER_HORVU1.034e-3877.89Ferredoxin OS=Hordeum vulgare PE=1 SV=1[more]
FER_SOLLY1.350e-3875.26Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_DATAR1.350e-3875.26Ferredoxin OS=Datura arborea PE=1 SV=1[more]
FER_SOLLS2.303e-3876.29Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER_ATRBE2.303e-3875.26Ferredoxin OS=Atropa belladonna PE=1 SV=1[more]
FER5_MAIZE2.303e-3858.45Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE... [more]
FER_SOLNI3.928e-3874.23Ferredoxin OS=Solanum nigrum PE=1 SV=1[more]
FER_CHLRE3.928e-3867.21Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER1_HYONI3.928e-3874.23Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6106 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739717 ID=CK739717; Name=CK739717; organism=Citrus sinensis; type=EST; length=559bp
GAGCAAGAGCAACAACAATGGCCACCCTCTCAAGCGCCATGGTAAGCACC
TCATTCATCAGAAGCAAGCCTACAGCGACCAGCCTCAAAGCCATGCCTAA
CATGGGTCAGGCTATGTTTGGCCTCAAAGCCAACAGAGGTGGCCGTGTTG
TAGCCATGGCTACATACAAAGTCAAGCTCATTACACCTGGGGGAGAGGAA
GAAATCAACTGTCCTGATGACACGTTTATTCTTGATGCTGCTGAAGAAGC
TGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTTCCTGTA
CTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTTCTG
GATGATGATCAAATGGGAGAAGGGTTTGTTCTCACTTGTGCTGCTTATCC
AACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCGCTGGTT
AATAATGTGCTCTTGATATCTCATTATTATCTTCTCTTTTATGTGTTGGG
GTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAATTTGAGA
AAAAAAAAA
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