CK739728

Overview
NameCK739728
Unique NameCK739728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11002 contig Csv1_Contig11002:64..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739728 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 43/129 (33.33%), Postives = 59/129 (45.74%), Query Frame = 1
Query:  166 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 492
            P +  W+    G  +   P +L G  PGDYG+D  GL  DP   K YRE E+IH RWA+   +GI        + G  +    WF+AGA             P  I   +  + L  Q++LMG +E  R
Sbjct:   42 PDRAKWL----GPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR 166          
BLAST of CK739728 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 43/111 (38.74%), Postives = 56/111 (50.45%), Query Frame = 1
Query:  220 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 492
            P +L+G  PGDYG+D  GL  DP      R  E+IHGRWAM   +G     V Q W G+      WF+AG+            +P  +   S  ++LG Q+LLMG VE  R
Sbjct:   67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 177          
BLAST of CK739728 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 41/111 (36.94%), Postives = 53/111 (47.75%), Query Frame = 1
Query:  220 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 492
            PE+L G  PGDYG+D  GL  DP     YRE ELIH RWA+   +GI        + G  +    WF+AGA            +   I   S  + L  Q++LMG  E+ R
Sbjct:   51 PEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR 161          
BLAST of CK739728 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 39/110 (35.45%), Postives = 51/110 (46.36%), Query Frame = 1
Query:  220 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKR 492
            P +L G  PGDYG+D  GL  DP   K YRE ELIH RWAM   +G          G  +    WF+AGA            +P  +   +  +    Q++LMG +E  R
Sbjct:   54 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR 163          
The following BLAST results are available for this feature:
BLAST of CK739728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CB2_CHLMO7.294e-1233.33Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_HORVU7.294e-1238.74Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE4.728e-1136.94Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE8.065e-1135.45Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6117 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739728 ID=CK739728; Name=CK739728; organism=Citrus sinensis; type=EST; length=595bp
TACAGAAGTCAAGTAGAGATCATATCTATGGCGGCTGCAACATCCGGGGC
TGTGTTAAACGGATTGGGTTCTTCATTCATAAATGGTGGCAAGAAGAGCC
AGGCTCTTTTGGCTGGCACGAATAGAGTGACAAGTTCTAAAAAGTCAGTT
GTTGTAGCTGCTCTTCCACCTAAAAAATCTTGGATTCCTGCTGTTAAAGG
TGGTGGCAACCTCATTAATCCCGAATGGCTCGATGGCTCTCTCCCAGGTG
ACTACGGATTCGACCCACTTGGGCTTGGAAAGGACCCAGCATTCCTGAAA
TGGTACAGAGAAGCAGAACTGATCCACGGACGATGGGCAATGGCTGCAGT
TGTTGGGATATTCGTCGGACAGGCGTGGAGTGGGATTCCATGGTTCGAGG
CTGGAGCAGATCCTGGAGCCATAGCACCCTTCTCCTTCGGCTCACTCCTG
GGAACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGCAAGCGGTGGGTTGA
TTTTTTCAATCCTGAATCTCAATCAGTTGAATGGGCAACACCTTGGTCAA
GAACTGCTGAAAACTTTGCCAATGCGACTGGTGAACAAGGCTACC
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