CK739731

Overview
NameCK739731
Unique NameCK739731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPW_MOUSE (T-complex protein 1 subunit zeta-2 OS=Mus musculus GN=Cct6b PE=2 SV=4)

HSP 1 Score: 97.8265 bits (242), Expect = 3.362e-20
Identity = 44/97 (45.36%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG 288
            V+GR +LG++AFADALL++PK LA+N+G D Q+ +I ++ +H +   ++G++ ++G+P+     GI+DNY VK+ +++S  VIA+ +LLVDE++RAG
Sbjct:  429 VQGRVRLGIQAFADALLIIPKVLAQNSGYDLQETLIKIQTKHAESKELLGIDLNTGEPMAAAEAGIWDNYCVKKHLLHSCTVIATNILLVDEIMRAG 525          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPZ_YEAST (T-complex protein 1 subunit zeta OS=Saccharomyces cerevisiae GN=CCT6 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.413e-18
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    4 EGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGE------HDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKPT 309
            +G+ + G+EAFA+ALLV+PKTL +N+G D  DV+  ++ E       D    VG++ + GD  DP +EGI+D+Y V R  I     IAS LLL DE++RAGR+  K T
Sbjct:  437 KGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAGRSTLKET 544          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPZ_CAEEL (T-complex protein 1 subunit zeta OS=Caenorhabditis elegans GN=cct-6 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.410e-18
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGN---IVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG-RNMRKP 306
            ++GRA+LG EAFA ALLV+PKTLA N G D Q+ ++ L  E         VGL+  +G  ++PQ  GI+DN +VK+  I+S  V+A  LLLVDEV+RAG  N+++P
Sbjct:  433 LKGRAKLGAEAFAQALLVIPKTLAVNGGYDAQETLVKLIEEKTAAGPDIAVGLDLETGGAVEPQ--GIWDNVTVKKNSISSATVLACNLLLVDEVMRAGMTNLKQP 536          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.011e-18
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNI-VGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG 288
            V GR QL VEAFADAL V+P+TLAENAG D  D ++ L+ +HD G+   GL+ ++GD ID + EGI +   VK Q I S    A+ +L +D+VI AG
Sbjct:  426 VGGREQLAVEAFADALEVIPRTLAENAGHDPIDSLVDLRSQHDGGDTEAGLDAYNGDVIDMESEGIVEPLRVKTQAIESATEAATMILRIDDVIAAG 522          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.012e-16
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNI-VGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG 288
            V GR QL VEAFA+AL ++P+TLAENAGLD  D ++ L+  HD G    GL+ ++G+ ID + EG+ +   VK Q I S    A  +L +D+VI AG
Sbjct:  427 VGGREQLAVEAFAEALDIIPRTLAENAGLDPIDSLVDLRSRHDGGEFAAGLDAYTGEVIDMEEEGVVEPLRVKTQAIESATEAAVMILRIDDVIAAG 523          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.255e-16
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNI-VGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 285
            VEGR QL VEAFADAL ++P+TLAEN+GLD  DV++ L+ +H+ G +  G++ + GD  D   EG+ +   VK Q + S    A  +L +D+VI A
Sbjct:  431 VEGREQLAVEAFADALEIIPRTLAENSGLDPIDVLVQLRAKHEDGQVTAGIDVYDGDVKDMLEEGVVEPLRVKTQALASATEAAEMILRIDDVIAA 526          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.946e-16
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 285
            + GR QL V AFA+AL +VPKTLAENAGLD+ DV++ L+  H+    +G++   G  +D +  G+ + + VK+Q I S    A  +L +D+VI A
Sbjct:  422 ISGREQLAVSAFAEALEIVPKTLAENAGLDSIDVLVDLRAAHEESTYMGIDVFDGKIVDMKEAGVIEPHRVKKQAIQSAAEAAEMILRIDDVIAA 516          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.024e-16
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 285
            + GR QL V AFADAL +VPKTLAENAGLD+ DV++ L+  H+    +G++   G+ +D +  G+ +   VK+Q I S    A  +L +D++I A
Sbjct:  422 ISGREQLAVSAFADALEIVPKTLAENAGLDSIDVLVDLRAAHEESPYMGIDVFDGNIVDMKEAGVIEPQRVKKQAIQSAAEAAEMILRIDDMIAA 516          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.119e-15
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    7 GRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRG-NIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 285
            GR QL VEAFA AL ++P+TLAENAGLD  DV++ LK  H++G    G++  +G  +D +  G+F+   VK Q I S   +A  +L +D++I A
Sbjct:  431 GREQLAVEAFATALEIIPRTLAENAGLDPIDVLVELKAAHEKGQKYAGVDVDTGKVVDMKERGVFEPLRVKTQAIGSATEVAVMILRIDDIIAA 524          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.555e-15
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDR--GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 285
            V GR QL V+AFADAL V+P+TLAEN+GLD  D+++ L+  H++  G + GL+   G+ +D   +G+ +   VK Q I+S    +  LL +D+VI A
Sbjct:  426 VAGREQLAVKAFADALEVIPRTLAENSGLDPIDMLVKLRAAHEKEGGEVYGLDVFEGEVVDMLEKGVVEPLKVKTQAIDSATEASVMLLRIDDVIAA 522          
The following BLAST results are available for this feature:
BLAST of CK739731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
TCPW_MOUSE3.362e-2045.36T-complex protein 1 subunit zeta-2 OS=Mus musculus... [more]
TCPZ_YEAST1.413e-1845.37T-complex protein 1 subunit zeta OS=Saccharomyces ... [more]
TCPZ_CAEEL2.410e-1849.06T-complex protein 1 subunit zeta OS=Caenorhabditis... [more]
THSA_HALSA7.011e-1850.52Thermosome subunit alpha OS=Halobacterium salinari... [more]
THS1_HALVO1.012e-1647.42Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
THS_METKA2.255e-1645.83Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]
THSB_METTH2.946e-1643.16Thermosome subunit beta OS=Methanobacterium thermo... [more]
THSA_METTH5.024e-1643.16Thermosome subunit alpha OS=Methanobacterium therm... [more]
THSB_ARCFU1.119e-1544.68Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]
THS_METJA5.555e-1543.30Thermosome subunit OS=Methanocaldococcus jannaschi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6120 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739731 ID=CK739731; Name=CK739731; organism=Citrus sinensis; type=EST; length=533bp
GTCGAAGGGCGTGCTCAATTGGGAGTTGAAGCTTTTGCCGATGCCCTTCT
TGTAGTGCCTAAGACACTTGCTGAGAATGCTGGGCTTGACACTCAAGATG
TGATCATTGCCTTGAAGGGTGAGCATGATAGGGGAAATATTGTGGGATTA
AACCAGCATTCAGGAGATCCCATTGACCCTCAAATGGAGGGAATCTTTGA
CAACTACTCTGTGAAGCGCCAAATTATTAACTCAGGGCCTGTAATTGCAT
CCCAGTTGCTCTTGGTAGATGAAGTAATCCGTGCTGGTCGTAATATGCGG
AAGCCAACTTAGTTCATTGATAAGCTACAACAAATATAATTTGTCATGTG
GGGGTTCTTTTACTGCTCGATTGTGTTAATGGATGGCCTTGAACTTATGG
AATGTGTAAGGAGGTTGTGTTTTGATGGTTGTGAACTCTCAGGCCGCAAG
CCCATAGAAAACTTGAAAAGGATGGAATGACCCCTATATTTTGTGTTCAA
TTTCATTATCTGCGGACCAATTTTGTTTTTGTA
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