CK739731

Overview
NameCK739731
Unique NameCK739731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.255e-15
Identity = 39/98 (39.80%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGR 291
            V G+ QL +EAFA+AL V+P+TLAENAGLD  + ++ +   H ++G  +G++ + G+P D    G+ +   VK+Q I S    A  +L +D+VI A +
Sbjct:  429 VGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKEKGQTIGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGN--IVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 285
            V GR QL V AFADAL VVP+TLAENAGLD  ++++ L+ +H  GN    GLN  +GD  +    G+ +   VK Q I S       LL +D+VI A
Sbjct:  424 VSGREQLAVRAFADALEVVPRTLAENAGLDAIEMLVKLRAKHAEGNNAYYGLNVFTGDVENMTENGVVEPLRVKTQAIQSATEATEMLLRIDDVIAA 520          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.111e-14
Identity = 39/96 (40.62%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 285
            V G+ QL +EAFA+AL V+P+TLAENAGLD  + ++ +   H ++G  +G++ + G+P D    G+ +   VK+Q I S    A  +L +D+VI A
Sbjct:  429 VGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKEKGPTIGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVIAA 524          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.111e-14
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 285
            V G+  L +E FADAL ++PKTLAENAGLDT ++++ +  EH +RG  +G++   G P D   +GI +   VK+Q I S    A  +L +D+VI A
Sbjct:  429 VGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAA 524          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.111e-14
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 285
            V G+  L +E FADAL ++PKTLAENAGLDT ++++ +  EH +RG  +G++   G P D   +GI +   VK+Q I S    A  +L +D+VI A
Sbjct:  429 VGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAA 524          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.703e-14
Identity = 40/99 (40.40%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNI-VGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRN 294
            V GR QL +EAFA AL ++P+TLAENAG+D  + +I LK EH++G I VG++  +    D + +G+ D   VK   + S   +A+ +L +D+VI + ++
Sbjct:  426 VGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKAEHEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKS 524          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.703e-14
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNI-VGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG 288
            V GR QL VEA+ADAL +VP+ LAENAGLD+ D ++ L+  H+ G +  GLN  +G+  D    G+ +    K Q + S    A+ +L +D++I AG
Sbjct:  430 VSGREQLAVEAYADALELVPRVLAENAGLDSIDTLVDLRAAHEDGQVRAGLNVFTGEVEDAFDAGVVETAHAKEQAVASASEAANLVLKIDDIIAAG 526          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.021e-14
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH--DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG 288
            V GR QL VEAFAD+L +VP+ LAENAGLD+ D ++ L+  H  D    +GLN  SGD  D    G+ +    K Q + S    A+ +L +D++I AG
Sbjct:  431 VSGREQLAVEAFADSLELVPRVLAENAGLDSIDTLVDLRSAHENDDDEHIGLNVLSGDLEDTFEAGVVEPAHAKEQAVTSASEAANLVLKIDDIISAG 528          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.048e-13
Identity = 38/98 (38.78%), Postives = 60/98 (61.22%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGR 291
            V G+ QL +EAFA+AL V+P+TLAENAGLD  + ++ +   H ++G  +G++   G+P D   +G+     V +Q I S    A  +L +D+VI A +
Sbjct:  429 VGGKEQLAIEAFAEALKVIPRTLAENAGLDPVETLVKVIAAHKEKGPTIGVDVFEGEPADMMEKGVIAPLRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.048e-13
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGL--NQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 285
            +EGR QL VEA+ADA+  +P+TLAEN G+D  D ++ L+  ++   + G+  +  SG+  DP   G+ D  +VKR+ I S    A+ ++ +D+VI A
Sbjct:  427 IEGRKQLAVEAYADAVEALPRTLAENTGMDPIDALVDLRARYETEGLAGIISSGRSGEIGDPVELGVIDPVAVKREAIESATEAATMIVRIDDVIAA 523          
The following BLAST results are available for this feature:
BLAST of CK739731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
THS_PYRHO7.255e-1539.80Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THS_METTL1.238e-1446.39Thermosome subunit OS=Methanococcus thermolithotro... [more]
THS_PYRAB2.111e-1440.63Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THSA_THEK12.111e-1443.75Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO2.111e-1443.75Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
THSA_THEAC4.703e-1440.40Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
THS2_HALVO4.703e-1442.27Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
THSB_HALSA8.021e-1443.88Thermosome subunit beta OS=Halobacterium salinariu... [more]
THS_DESSY3.048e-1338.78Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THS3_HALVO3.048e-1339.18Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6120 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739731 ID=CK739731; Name=CK739731; organism=Citrus sinensis; type=EST; length=533bp
GTCGAAGGGCGTGCTCAATTGGGAGTTGAAGCTTTTGCCGATGCCCTTCT
TGTAGTGCCTAAGACACTTGCTGAGAATGCTGGGCTTGACACTCAAGATG
TGATCATTGCCTTGAAGGGTGAGCATGATAGGGGAAATATTGTGGGATTA
AACCAGCATTCAGGAGATCCCATTGACCCTCAAATGGAGGGAATCTTTGA
CAACTACTCTGTGAAGCGCCAAATTATTAACTCAGGGCCTGTAATTGCAT
CCCAGTTGCTCTTGGTAGATGAAGTAATCCGTGCTGGTCGTAATATGCGG
AAGCCAACTTAGTTCATTGATAAGCTACAACAAATATAATTTGTCATGTG
GGGGTTCTTTTACTGCTCGATTGTGTTAATGGATGGCCTTGAACTTATGG
AATGTGTAAGGAGGTTGTGTTTTGATGGTTGTGAACTCTCAGGCCGCAAG
CCCATAGAAAACTTGAAAAGGATGGAATGACCCCTATATTTTGTGTTCAA
TTTCATTATCTGCGGACCAATTTTGTTTTTGTA
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