CK739731

Overview
NameCK739731
Unique NameCK739731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.791e-13
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGN-IVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVI 279
            + GR QL +E FADA+  +P+ LAENAGLD  D+++ L+ EH +GN   G+N  +G+  D    G+ +   V +Q I S    A  +L +D+VI
Sbjct:  427 IGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 520          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.869e-13
Identity = 38/98 (38.78%), Postives = 59/98 (60.20%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGR 291
            V G+ QL +EAFA+AL V+P+TLAENAGLD  + ++ +   H ++G  +G++   G+P D    G+     V +Q I S    A  +L +D+VI A +
Sbjct:  429 VGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKEKGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.869e-13
Identity = 38/98 (38.78%), Postives = 59/98 (60.20%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGR 291
            V G+ QL +EAFA+AL V+P+TLAENAGLD  + ++ +   H ++G  +G++   G+P D    G+     V +Q I S    A  +L +D+VI A +
Sbjct:  429 VGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKEKGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.580e-12
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 285
            V G+  L +E FADAL ++PKTLAENAGLDT ++++ +  EH ++G  +G++  +G+P D    GI     V +Q I S    A  +L +D+VI A
Sbjct:  429 VGGKEALAIENFADALKIIPKTLAENAGLDTVEILVKVISEHKNKGLGIGIDVFAGEPADMLERGIIAPLRVTKQAIKSARA-AIMILRIDDVIAA 523          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.580e-12
Identity = 38/94 (40.43%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    7 GRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIV-GLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 285
            GR QL  EAFA AL V+P+ LAEN+GLD  D+++ L+  H+ G    G++  SG+    +  G+ +   VK Q I S   +A  +L +D+VI A
Sbjct:  431 GREQLAAEAFASALEVIPRALAENSGLDPIDILVELRKAHEEGKTTYGVDVFSGEVACMKERGVLEPLKVKTQAITSATEVAIMILRIDDVIAA 524          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 36/101 (35.64%), Postives = 58/101 (57.43%), Query Frame = 1
Query:    7 GRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNI-VGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKP 306
            G+  + +E+FA AL ++P  +A+NAG D+ D++  L+  H  G I  GL+   G   D  + GI +++ VKRQ++ S    A  +L VD +I+A    R P
Sbjct:  430 GKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGRITAGLDMKEGSIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 36/101 (35.64%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    7 GRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNI-VGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKP 306
            G+  + +E+FA AL ++P  +A+NAG D+ D++  L+  H  G+I  GL+   G   D  + GI +++ VKRQ++ S    A  +L VD +I+A    R P
Sbjct:  430 GKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGHITAGLDMKEGTIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 4.866e-11
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 1
Query:    7 GRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGN-IVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKP 306
            G+  + +E++A AL ++P  +A+NAG D+ D++  L+  H  GN   GL+   G   D  + GI +++ VKRQ++ S    A  +L VD +I+A    R P
Sbjct:  430 GKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGNTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 4.866e-11
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 1
Query:    7 GRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGN-IVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKP 306
            G+  + +E++A AL ++P  +A+NAG D+ D++  L+  H  GN   GL+   G   D  + GI +++ VKRQ++ S    A  +L VD +I+A    R P
Sbjct:  430 GKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGNTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: THSB_THEK8 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-8) GN=thsB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.356e-11
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGR 291
            V G+ QL +EAFA+AL V+P+TLA NAGLD  + ++ +   H ++G  +G++   G+P D    G+     V +Q I S    A  +L +D+VI A +
Sbjct:  429 VGGKEQLAIEAFAEALKVIPRTLAGNAGLDPIETLVKVIAAHKEKGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSAKA-AIMILRIDDVIAASK 525          
The following BLAST results are available for this feature:
BLAST of CK739731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
THSB_THEAC6.791e-1340.43Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
THSB_THEK18.869e-1338.78Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSB_PYRKO8.869e-1338.78Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THSA_THEK82.580e-1241.67Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_ARCFU2.580e-1240.43Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]
TCPB_RAT2.853e-1135.64T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPB_MOUSE2.853e-1135.64T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPB_MACFA4.866e-1134.65T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN4.866e-1134.65T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
THSB_THEK86.356e-1137.76Thermosome subunit beta OS=Thermococcus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6120 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739731 ID=CK739731; Name=CK739731; organism=Citrus sinensis; type=EST; length=533bp
GTCGAAGGGCGTGCTCAATTGGGAGTTGAAGCTTTTGCCGATGCCCTTCT
TGTAGTGCCTAAGACACTTGCTGAGAATGCTGGGCTTGACACTCAAGATG
TGATCATTGCCTTGAAGGGTGAGCATGATAGGGGAAATATTGTGGGATTA
AACCAGCATTCAGGAGATCCCATTGACCCTCAAATGGAGGGAATCTTTGA
CAACTACTCTGTGAAGCGCCAAATTATTAACTCAGGGCCTGTAATTGCAT
CCCAGTTGCTCTTGGTAGATGAAGTAATCCGTGCTGGTCGTAATATGCGG
AAGCCAACTTAGTTCATTGATAAGCTACAACAAATATAATTTGTCATGTG
GGGGTTCTTTTACTGCTCGATTGTGTTAATGGATGGCCTTGAACTTATGG
AATGTGTAAGGAGGTTGTGTTTTGATGGTTGTGAACTCTCAGGCCGCAAG
CCCATAGAAAACTTGAAAAGGATGGAATGACCCCTATATTTTGTGTTCAA
TTTCATTATCTGCGGACCAATTTTGTTTTTGTA
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