CK739740 | Citrus Genome Database

Overview


Name	CK739740
Unique Name	CK739740
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	539

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 14332_ARATH (14-3-3-like protein GF14 omega OS=Arabidopsis thaliana GN=GRF2 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.037e-47
Identity = 71/141 (50.35%), Postives = 88/141 (62.41%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG-----------MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRI+SSIEQKEE++G            +K E +     +G     K L   ++       P++ SG+S VFY KMKGDY+RYLAEFK   +RK+AA+H+L           +EL PTHPIRLGLALNFSVFYYEILNS
Sbjct:   60 RASWRIISSIEQKEESRGNDDHVTAIREYRSKIETELSGICDG---ILKLLDSRLI-------PAAASGDSKVFYLKMKGDYHRYLAEFKTGQERKDAAEHTLAAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNS 190

HSP 2 Score: 91.2781 bits (225), Expect = 1.037e-47
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            P+RAC+LAKQAFDEAIAELD+L EESYKDSTLIMQLLRDNLTLWTSD+ +
Sbjct:  191 PDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQD 240

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: BMH2_YEAST (Protein BMH2 OS=Saccharomyces cerevisiae GN=BMH2 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.760e-47
Identity = 71/136 (52.21%), Postives = 88/136 (64.71%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKGMNKCEED*------GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRI+SSIEQKEE+K  ++ + +        I  E  +    D+   +  H     PS+T+GES VFYYKMKGDY+RYLAEF   D R++A + SL+          +ELPPTHPIRLGLALNFSVFYYEI NS
Sbjct:   58 RASWRIVSSIEQKEESKEKSEHQVELIRSYRSKIETELTK-ISDDILSVLDSH---LIPSATTGESKVFYYKMKGDYHRYLAEFSSGDAREKATNSSLEAYKTASEIATTELPPTHPIRLGLALNFSVFYYEIQNS 189

HSP 2 Score: 93.2041 bits (230), Expect = 1.760e-47
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            P++ACHLAKQAFD+AIAELD+L+EESYKDSTLIMQLLRDNLTLWTSD+ E
Sbjct:  190 PDKACHLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDISE 239

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: RAD25_SCHPO (DNA damage checkpoint protein rad25 OS=Schizosaccharomyces pombe GN=rad25 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.294e-47
Identity = 72/141 (51.06%), Postives = 87/141 (61.70%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG-----------MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRI+SSIEQKEE++G             K E++           C D+   +  H     P++T+GES VFYYKMKGDYYRYLAEF   +  KEAAD SL+          +ELPPT P+RLGLALNFSVFYYEIL+S
Sbjct:   58 RASWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSD-------ICHDVLSVLEKH---LIPAATTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVFYYEILDS 188

HSP 2 Score: 90.5077 bits (223), Expect = 2.294e-47
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSD 530
            PE ACHLAKQ FDEAI+ELDSL+EESYKDSTLIMQLLRDNLTLWTSD
Sbjct:  189 PESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSD 235

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 14331_MAIZE (14-3-3-like protein GF14-6 OS=Zea mays GN=GRF1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.295e-47
Identity = 73/141 (51.77%), Postives = 87/141 (61.70%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG-----------MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRI+SSIEQKEE +G             K E +     +G     K L  ++V       PSST+ ES VFY KMKGDYYRYLAEFK   +RK+AA++++           +EL PTHPIRLGLALNFSVFYYEILNS
Sbjct:   63 RASWRIISSIEQKEEGRGNEDRVTLIKDYRGKIETELTKICDG---ILKLLETHLV-------PSSTAPESKVFYLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELAPTHPIRLGLALNFSVFYYEILNS 193

HSP 2 Score: 90.8929 bits (224), Expect = 2.295e-47
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            P+RAC LAKQAFDEAI+ELD+L+EESYKDSTLIMQLLRDNLTLWTSD+ E
Sbjct:  194 PDRACSLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISE 243

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 1433C_TOBAC (14-3-3-like protein C OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.295e-47
Identity = 72/141 (51.06%), Postives = 87/141 (61.70%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG-----------MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRI+SSIEQKEE++G            +K E +     +G     K L   ++       PS+ SG+S VFY KMKGDY+RYLAEFK   +RKEAA+ +L           +EL PTHPIRLGLALNFSVFYYEILNS
Sbjct:   63 RASWRIISSIEQKEESRGNEEHVNSIREYRSKIENELSKICDG---ILKLLDAKLI-------PSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNS 193

HSP 2 Score: 91.2781 bits (225), Expect = 2.295e-47
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            P+RAC+LAKQAFDEAIAELD+L EESYKDSTLIMQLLRDNLTLWTSD+ +
Sbjct:  194 PDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQD 243

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 1433A_HORVU (14-3-3-like protein A OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.295e-47
Identity = 71/141 (50.35%), Postives = 88/141 (62.41%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG-----------MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRI+SSIEQKEE++G             + E +     +G     K L  ++V       PS+T+ ES VFY KMKGDY+RYLAEFK   +RKEAA+++L           ++LP THPIRLGLALNFSVFYYEILNS
Sbjct:   63 RASWRIISSIEQKEESRGNEAYVASIKEYRTRIETELSKICDG---ILKLLDSHLV-------PSATAAESKVFYLKMKGDYHRYLAEFKAGAERKEAAENTLVAYKSAQDIALADLPTTHPIRLGLALNFSVFYYEILNS 193

HSP 2 Score: 91.6633 bits (226), Expect = 2.295e-47
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            P+RAC+LAKQAFDEAIAELDSL EESYKDSTLIMQLLRDNLTLWTSD  E
Sbjct:  194 PDRACNLAKQAFDEAIAELDSLGEESYKDSTLIMQLLRDNLTLWTSDNAE 243

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 1433_DICDI (14-3-3-like protein OS=Dictyostelium discoideum GN=fttB PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.296e-47
Identity = 74/139 (53.24%), Postives = 86/139 (61.87%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKGMN---------KCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRI+SSIEQKEE+KG           KC+ +  +        C D+   +  H      SS SGES VFYYKMKGDY+RYLAEF   + RK +A+ SL           +ELPPTHPIRLGLALNFSVFYYEILNS
Sbjct:   56 RASWRIISSIEQKEESKGNENHVKKIKEYKCKVEKEL-----TDICNDILEVLESHLIV---SSASGESKVFYYKMKGDYFRYLAEFATGNPRKTSAESSLIAYKAASDIAVTELPPTHPIRLGLALNFSVFYYEILNS 186

HSP 2 Score: 86.2705 bits (212), Expect = 2.296e-47
Identity = 40/48 (83.33%), Postives = 47/48 (97.92%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDL 533
            P+RAC+LAK AFD+AIAELD+L+E+SYKDSTLIMQLLRDNLTLWTSD+
Sbjct:  187 PDRACNLAKTAFDDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSDV 234

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 1433B_TOBAC (14-3-3-like protein B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.992e-47
Identity = 71/141 (50.35%), Postives = 88/141 (62.41%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG-----------MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRI+SSIEQKEE++G            +K E +     +G     K L   ++       PS+++G+S VFY KMKGDY+RYLAEFK   +RKEAA+ +L           +EL PTHPIRLGLALNFSVFYYEILNS
Sbjct:   59 RASWRIISSIEQKEESRGNEDHVKCIQEYRSKIESELSNICDG---ILKLLDSCLI-------PSASAGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLSAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNS 189

HSP 2 Score: 91.2781 bits (225), Expect = 2.992e-47
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            P+RAC+LAKQAFDEAIAELD+L EESYKDSTLIMQLLRDNLTLWTSD+ +
Sbjct:  190 PDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQD 239

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 14332_SOLLC (14-3-3 protein 2 OS=Solanum lycopersicum GN=TFT2 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.992e-47
Identity = 71/141 (50.35%), Postives = 88/141 (62.41%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG-----------MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRI+SSIEQKEE++G            +K E +     +G     K L   ++       PS+++G+S VFY KMKGDY+RYLAEFK   +RKEAA+ +L           +EL PTHPIRLGLALNFSVFYYEILNS
Sbjct:   58 RASWRIISSIEQKEESRGNEEHVKCIKEYRSKIESELSDICDG---ILKLLDSNLI-------PSASNGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLSAYKAAQDIANTELAPTHPIRLGLALNFSVFYYEILNS 188

HSP 2 Score: 91.2781 bits (225), Expect = 2.992e-47
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            P+RAC+LAKQAFDEAIAELD+L EESYKDSTLIMQLLRDNLTLWTSD+ +
Sbjct:  189 PDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQD 238

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 1433_TRIHA (14-3-3 protein homolog OS=Trichoderma harzianum PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.898e-47
Identity = 72/141 (51.06%), Postives = 88/141 (62.41%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKGMN-----------KCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRI++SIEQKEE+KG +           K E +           C D+   +  H     PS+ SGES VFY+K+KGDY+RYLAEF   D RK++AD SL+          +ELPPTHPIRLGLALNFSVFYYEILN+
Sbjct:   56 RASWRIVTSIEQKEESKGNSSQVTLIKEYRQKIENELAK-------ICDDILEVLDQH---LIPSAKSGESKVFYHKIKGDYHRYLAEFAIGDRRKDSADKSLEAYKAATEVAQTELPPTHPIRLGLALNFSVFYYEILNA 186

HSP 2 Score: 88.5817 bits (218), Expect = 3.898e-47
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            P++ACHLAKQAFD+AIAELD+L+EESYKDSTLIMQLLRDNLTLWTS   E
Sbjct:  187 PDQACHLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSSEAE 236

The following BLAST results are available for this feature:

BLAST of CK739740 vs. ExPASy Swiss-Prot

BLAST of CK739740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143


Match Name	E-value	Identity	Description
14332_ARATH	1.037e-47	50.35	14-3-3-like protein GF14 omega OS=Arabidopsis thal...	[more]
BMH2_YEAST	1.760e-47	52.21	Protein BMH2 OS=Saccharomyces cerevisiae GN=BMH2 P...	[more]
RAD25_SCHPO	2.294e-47	51.06	DNA damage checkpoint protein rad25 OS=Schizosacch...	[more]
14331_MAIZE	2.295e-47	51.77	14-3-3-like protein GF14-6 OS=Zea mays GN=GRF1 PE=...	[more]
1433C_TOBAC	2.295e-47	51.06	14-3-3-like protein C OS=Nicotiana tabacum PE=1 SV...	[more]
1433A_HORVU	2.295e-47	50.35	14-3-3-like protein A OS=Hordeum vulgare PE=2 SV=1	[more]
1433_DICDI	2.296e-47	53.24	14-3-3-like protein OS=Dictyostelium discoideum GN...	[more]
1433B_TOBAC	2.992e-47	50.35	14-3-3-like protein B OS=Nicotiana tabacum PE=2 SV...	[more]
14332_SOLLC	2.992e-47	50.35	14-3-3 protein 2 OS=Solanum lycopersicum GN=TFT2 P...	[more]
1433_TRIHA	3.898e-47	51.06	14-3-3 protein homolog OS=Trichoderma harzianum PE...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_6129 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59B04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739740 ID=CK739740; Name=CK739740; organism=Citrus sinensis; type=EST; length=539bp
AGAGCATCATGGAGGATTTTGTCTTCCATTGAACAGAAGGAGGAGGCCAA
GGGTATGAACAAATGTGAAGAGGATTAAGGAATATAGGCAGAGGGTTGAA
GATGAGCTTGCAAAGATCTGTAATGATATATTGTCTGTCATTGATGAACA
CCTAATCCATCCTCCACATCTGGAGAATCAACCGTGTTTTACTATAAGAT
GAAAGGAGATTATTACCGTTACCTAGCTGAGTTCAAAGGTGCTGATGATC
GTAAGGAAGCTGCAGATCATTCACTTAAGGCTTACGAGGCTGCTACAGCT
GCAGCAGCCTCAGAGTTACCCCCAACTCATCCAATCAGACTTGGCCTGGC
TCTTAACTTTTCTGTTTTCTACTATGAGATTTTGAACTCCCTGAGAGGGC
TTGCCACCTGGCTAAACAAGCATTTGATGAGGCGATTGCTGAACTTGATA
GCCTTAATGAAGAGTCCTACAAGGACAGCACCCTTATTATGCAGCTTCTT
CGGGATAATCTCACCTTGTGGACCTCGGATCTACCGGAG