CK739745

Overview
NameCK739745
Unique NameCK739745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length359
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1624 contig Csv1_Contig1624:226..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A4_WHEAT (Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 9.471e-22
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 259
            GNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH  LLPKK  +S     D+D
Sbjct:   69 GNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKASSSKVSTVDDD 133          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.471e-22
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 256
            GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLGDVTIA GGV+PNIH  LLPKK+G  G KA+ E
Sbjct:   67 GNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSG-KGDKASQE 129          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.237e-21
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 229
            GNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH +LLPKK+G
Sbjct:   71 GNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSG 125          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A_BOTFB (Histone H2A OS=Botryotinia fuckeliana (strain B05.10) GN=hta1 PE=3 SV=4)

HSP 1 Score: 101.293 bits (251), Expect = 1.616e-21
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG-TSGSKAADED 259
            GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  T+G K A ++
Sbjct:   70 GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTAKTAGGKPASQE 135          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.616e-21
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 229
            GNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLP K G
Sbjct:   75 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.616e-21
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 229
            GNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLP K G
Sbjct:   75 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.756e-21
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSK 244
            GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKTG+  SK
Sbjct:   67 GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGSKSSK 126          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A_NEOFI (Histone H2A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hta1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.756e-21
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 256
            GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  SG   + E
Sbjct:   69 GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPSQE 132          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A_ASPOR (Histone H2A OS=Aspergillus oryzae GN=hta1 PE=3 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 2.756e-21
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 256
            GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  SG   + E
Sbjct:   69 GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPSQE 132          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A_ASPFU (Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 2.756e-21
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 256
            GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  SG   + E
Sbjct:   69 GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPSQE 132          
The following BLAST results are available for this feature:
BLAST of CK739745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
H2A4_WHEAT9.471e-2276.92Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 S... [more]
H2A2_PICGU9.471e-2276.56Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=... [more]
H2AX_PICAB1.237e-2189.09Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2A_BOTFB1.616e-2174.24Histone H2A OS=Botryotinia fuckeliana (strain B05.... [more]
H2AXB_ARATH1.616e-2189.09Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2AXA_ARATH1.616e-2189.09Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2A_PARAN2.756e-2178.33Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2A_NEOFI2.756e-2175.00Histone H2A OS=Neosartorya fischeri (strain ATCC 1... [more]
H2A_ASPOR2.756e-2175.00Histone H2A OS=Aspergillus oryzae GN=hta1 PE=3 SV=... [more]
H2A_ASPFU2.756e-2175.00Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6134 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739745 ID=CK739745; Name=CK739745; organism=Citrus sinensis; type=EST; length=359bp
CGGAGCCCCGGTTTATCTCGCCGCCGTCCTTGAATATCTCGCCGCTGAGG
TTTTGGAATTAGCTGGAAATGCTGCAAGGGACAACAAGAAAACACGAATT
GTCCCTCGCCACATCCAATTGGCTGTCAGGAATGATGAGGAGCTCAGCAA
GCTTCTTGGGGATGTTACCATTGCTAACGGTGGTGTGATGCCCAACATCC
ACAACCTTCTCCTTCCCAAGAAGACTGGAACTTCAGGGTCCAAGGCTGCT
GATGAAGACAGTTAAATTCTCATCACTAGAAGAGTCAAAGTGATATGATC
AACACTCTTTGTGTTAATTGTGCTATGTGACATTTGCCTTTTTAGTGTTT
GTTTAGTTA
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