CK739746

Overview
NameCK739746
Unique NameCK739746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2850 contig Csv1_Contig2850:306..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.196e-41
Identity = 81/95 (85.26%), Postives = 86/95 (90.53%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL+Q+KDGF  GKDLV+SV  AMGEEQI  +KDIGPK
Sbjct:   65 IFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.562e-41
Identity = 81/95 (85.26%), Postives = 86/95 (90.53%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+NLL+ IKDGF  GKDLV+SV  AMGEEQI  +KD+GPK
Sbjct:   65 IFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.562e-41
Identity = 81/95 (85.26%), Postives = 86/95 (90.53%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+NLL+ IKDGF  GKDLV+SV  AMGEEQI  +KD+GPK
Sbjct:   65 IFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.040e-41
Identity = 82/95 (86.32%), Postives = 87/95 (91.58%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL+Q+K GFE GKDLV+SV  AMGEEQI A+KDIG K
Sbjct:   65 IFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDALLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTK 159          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 5.935e-41
Identity = 81/95 (85.26%), Postives = 86/95 (90.53%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IFN KKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL+Q+K GFE GKDLV+SV  AMGEEQI A+KDIG K
Sbjct:   65 IFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTK 159          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A1_ARATH (Eukaryotic translation initiation factor 5A-1 OS=Arabidopsis thaliana GN=At1g13950 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.727e-40
Identity = 79/95 (83.16%), Postives = 85/95 (89.47%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IF  KKLEDIVPSSHNCDVPHV RTDYQLIDISEDG+VSLLT+NG+TKDDL+LP D+ LL QIK GF+ GKDLVVSV  AMGEEQINALKDIGPK
Sbjct:   64 IFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A3_ARATH (Eukaryotic translation initiation factor 5A-3 OS=Arabidopsis thaliana GN=At1g69410 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.253e-39
Identity = 76/95 (80.00%), Postives = 86/95 (90.53%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IF  KKLEDIVPSSHNCDVPHV R DYQLIDISEDGFVSLLT+NG+TKDDL+LPTDE LL+Q+K+GFE GKD+VVSV  AMGEEQ+ ALK++GPK
Sbjct:   64 IFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A1_MEDSA (Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 7.255e-39
Identity = 80/96 (83.33%), Postives = 86/96 (89.58%), Query Frame = 1
Query:    1 IFNGKKLEDI-VPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IF  KKLE++ VPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD++LL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIG K
Sbjct:   65 IFTSKKLEEVYVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGGK 160          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A_DIACA (Eukaryotic translation initiation factor 5A OS=Dianthus caryophyllus PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.048e-37
Identity = 71/92 (77.17%), Postives = 85/92 (92.39%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDI 276
            IFNGKKLEDIVPSSHNCDVPHV R DYQL+DI+EDGFVSLLT++G+TKDDL+LP DE L+ Q+K+GFE+GKDL++SV CAMGEEQI A+KD+
Sbjct:   65 IFNGKKLEDIVPSSHNCDVPHVNRVDYQLLDITEDGFVSLLTDSGDTKDDLKLPADEALVKQMKEGFEAGKDLILSVMCAMGEEQICAVKDV 156          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A2_ARATH (Eukaryotic translation initiation factor 5A-2 OS=Arabidopsis thaliana GN=At1g26630 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.154e-34
Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIG 279
            IF  KKLEDIVPSSHNCDVPHV R DYQLIDI+EDGFVSLLT++G TKDDL+LPTD+ L +Q++ GF+ GKD+VVSV  +MGEEQI A+K++G
Sbjct:   64 IFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156          
The following BLAST results are available for this feature:
BLAST of CK739746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
IF5A1_SOLLC1.196e-4185.26Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A1_TOBAC1.562e-4185.26Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL1.562e-4185.26Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_SOLTU2.040e-4186.32Eukaryotic translation initiation factor 5A-1/2 OS... [more]
IF5A4_SOLLC5.935e-4185.26Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_ARATH1.727e-4083.16Eukaryotic translation initiation factor 5A-1 OS=A... [more]
IF5A3_ARATH4.253e-3980.00Eukaryotic translation initiation factor 5A-3 OS=A... [more]
IF5A1_MEDSA7.255e-3983.33Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A_DIACA1.048e-3777.17Eukaryotic translation initiation factor 5A OS=Dia... [more]
IF5A2_ARATH3.154e-3472.04Eukaryotic translation initiation factor 5A-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6135 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739746 ID=CK739746; Name=CK739746; organism=Citrus sinensis; type=EST; length=477bp
ATCTTCAATGGCAAGAAGCTTGAGGATATTGTTCCCTCTTCCCACAACTG
TGATGTTCCTCATGTCACTCGCACTGACTACCAGCTGATTGATATCTCTG
AGGATGGATTTGTTAGCCTGCTGACTGAGAATGGCAATACCAAGGATGAC
CTGAGACTTCCAACTGATGAAAATCTGCTTTCACAGATCAAGGATGGATT
TGAGAGTGGGAAAGATCTGGTTGTCTCAGTTCAGTGTGCTATGGGAGAGG
AGCAGATCAATGCCCTGAAGGACATTGGCCCCAAGTAAAAGACTTTTGCT
TGATCGAGAATGCAGATTGCTGAAAGCTGTGGGAAGGTGGATAGTAGTGT
AGCTTTACTGGTGTCCGGTTTCAAGATGAATGCCATCATTTCATATAAAA
TGACTCTTACCATATTATTAATTGGTTTCTATCGACAGTATTTTTATTCT
GTTTGATTGCTTGAAAGTTGAAACATG
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