CK739746

Overview
NameCK739746
Unique NameCK739746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A_SPOFR (Eukaryotic translation initiation factor 5A OS=Spodoptera frugiperda GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.059e-22
Identity = 48/90 (53.33%), Postives = 71/90 (78.89%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 270
            IFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ +NG+ ++DL++P D +L +Q++  F+SGK+L+ +V  + GEE + A+K
Sbjct:   65 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A_SPOEX (Eukaryotic translation initiation factor 5A OS=Spodoptera exigua GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.059e-22
Identity = 48/90 (53.33%), Postives = 71/90 (78.89%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 270
            IFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ +NG+ ++DL++P D +L +Q++  F+SGK+L+ +V  + GEE + A+K
Sbjct:   65 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A2_SCHPO (Eukaryotic translation initiation factor 5A-2 OS=Schizosaccharomyces pombe GN=tif51b PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.999e-21
Identity = 50/91 (54.95%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKD 273
            IFNG+K ED+ PS+HN DVP V R +YQL++I +DG+++L+T +G TKDD+RLP  E L ++I++GFE GKDL+++V  AMGEE   A +D
Sbjct:   65 IFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGFEEGKDLIITVVSAMGEEIALACRD 153          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A1_SCHPO (Eukaryotic translation initiation factor 5A-1 OS=Schizosaccharomyces pombe GN=tif51a PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.164e-20
Identity = 48/91 (52.75%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKD 273
            IFNG+K ED+ PS+HN DVP V R +YQL++I +DG+++L+T +G TKDD+RLP  E L ++I++GF+ G+DL+++V  AMGEE   A +D
Sbjct:   65 IFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGFDEGRDLIITVVSAMGEETALACRD 153          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A2_PONAB (Eukaryotic translation initiation factor 5A-2 OS=Pongo abelii GN=EIF5A2 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 270
            IF GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +I+  + +G+D+ VSV CAM EE   A+K
Sbjct:   63 IFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A2_MOUSE (Eukaryotic translation initiation factor 5A-2 OS=Mus musculus GN=Eif5a2 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 270
            IF GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +I+  + +G+D+ VSV CAM EE   A+K
Sbjct:   63 IFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A2_HUMAN (Eukaryotic translation initiation factor 5A-2 OS=Homo sapiens GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 270
            IF GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +I+  + +G+D+ VSV CAM EE   A+K
Sbjct:   63 IFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A_CANAL (Eukaryotic translation initiation factor 5A OS=Candida albicans GN=ANB1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 45/91 (49.45%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKD 273
            IF GKKLED+ PS+HN +VP+V+R ++QL+DI +DG++SL+T +G+TKDD+++P  E L  +++  F+ GKDL+V++  AMGEE   + K+
Sbjct:   63 IFTGKKLEDLSPSTHNMEVPNVSRQEFQLLDI-DDGYLSLMTADGDTKDDVKVPEGE-LGDKLQSEFDEGKDLIVTIISAMGEEAAISYKE 151          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A1_YEAST (Eukaryotic translation initiation factor 5A-1 OS=Saccharomyces cerevisiae GN=HYP1 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 1.422e-18
Identity = 46/91 (50.55%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKD 273
            IF GKKLED+ PS+HN +VP V R++YQL+DI +DG++SL+T +G TKDD++ P  E L   ++  F+ GKDL+V++  AMGEE   + K+
Sbjct:   64 IFTGKKLEDLSPSTHNLEVPFVKRSEYQLLDI-DDGYLSLMTMDGETKDDVKAPEGE-LGDSMQAAFDEGKDLMVTIISAMGEEAAISFKE 152          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A_DROME (Eukaryotic translation initiation factor 5A OS=Drosophila melanogaster GN=eIF-5A PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.858e-18
Identity = 47/90 (52.22%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 270
            IF+ KK EDI PS+HN DVP+V R D QLI IS+D F++L+TE+G+ ++DL++P  E L  Q++  F+SGKDL+ +V  A GEE + A+K
Sbjct:   64 IFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGE-LGEQLRLDFDSGKDLLCTVLKACGEECVIAIK 152          
The following BLAST results are available for this feature:
BLAST of CK739746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
IF5A_SPOFR8.059e-2253.33Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A_SPOEX8.059e-2253.33Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A2_SCHPO3.999e-2154.95Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A1_SCHPO1.164e-2052.75Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A2_PONAB2.195e-1954.44Eukaryotic translation initiation factor 5A-2 OS=P... [more]
IF5A2_MOUSE2.195e-1954.44Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A2_HUMAN2.195e-1954.44Eukaryotic translation initiation factor 5A-2 OS=H... [more]
IF5A_CANAL3.743e-1949.45Eukaryotic translation initiation factor 5A OS=Can... [more]
IF5A1_YEAST1.422e-1850.55Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A_DROME1.858e-1852.22Eukaryotic translation initiation factor 5A OS=Dro... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6135 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739746 ID=CK739746; Name=CK739746; organism=Citrus sinensis; type=EST; length=477bp
ATCTTCAATGGCAAGAAGCTTGAGGATATTGTTCCCTCTTCCCACAACTG
TGATGTTCCTCATGTCACTCGCACTGACTACCAGCTGATTGATATCTCTG
AGGATGGATTTGTTAGCCTGCTGACTGAGAATGGCAATACCAAGGATGAC
CTGAGACTTCCAACTGATGAAAATCTGCTTTCACAGATCAAGGATGGATT
TGAGAGTGGGAAAGATCTGGTTGTCTCAGTTCAGTGTGCTATGGGAGAGG
AGCAGATCAATGCCCTGAAGGACATTGGCCCCAAGTAAAAGACTTTTGCT
TGATCGAGAATGCAGATTGCTGAAAGCTGTGGGAAGGTGGATAGTAGTGT
AGCTTTACTGGTGTCCGGTTTCAAGATGAATGCCATCATTTCATATAAAA
TGACTCTTACCATATTATTAATTGGTTTCTATCGACAGTATTTTTATTCT
GTTTGATTGCTTGAAAGTTGAAACATG
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