CK739749

Overview
NameCK739749
Unique NameCK739749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length382
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:646..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.546e-32
Identity = 63/78 (80.77%), Postives = 69/78 (88.46%), Query Frame = 2
Query:    5 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 238
            DPLYPG +FDPLGLADDP+ FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  195 DPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.937e-32
Identity = 64/78 (82.05%), Postives = 70/78 (89.74%), Query Frame = 2
Query:    5 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 238
            DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  174 DPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.565e-31
Identity = 63/79 (79.75%), Postives = 67/79 (84.81%), Query Frame = 2
Query:    5 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 241
            D LYPGG FDPLGLADDP+ FAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  174 DTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.983e-28
Identity = 64/80 (80.00%), Postives = 68/80 (85.00%), Query Frame = 2
Query:    2 TDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 241
            TDPLYPG SFD LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  189 TDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.732e-23
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 2
Query:    5 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 208
            D L+PGG FDPLGLA DPE  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  198 DKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.954e-23
Identity = 53/79 (67.09%), Postives = 58/79 (73.42%), Query Frame = 2
Query:    5 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 238
            D LYPGG FDPLGLADDP+ F ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:   43 DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.792e-20
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 2
Query:    5 DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 208
            DP YPGG  F+PLG   D ++  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  197 DPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.764e-19
Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 2
Query:    5 DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 208
            +P YPGG F +PLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  199 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.373e-18
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 2
Query:   14 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 208
            YPGG+FDPLG + DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  167 YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.373e-18
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 2
Query:   14 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 208
            YPGG+FDPLG + DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:  168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
The following BLAST results are available for this feature:
BLAST of CK739749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB2_DUNSA4.546e-3280.77Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE5.937e-3282.05Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE6.565e-3179.75Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO3.983e-2880.00Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB26_ARATH1.732e-2375.00Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_EUGGR2.954e-2367.09Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB13_SOLLC1.792e-2065.22Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA5.764e-1959.42Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU6.373e-1866.67Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC6.373e-1866.67Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6138 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739749 ID=CK739749; Name=CK739749; organism=Citrus sinensis; type=EST; length=382bp
GACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTG
ATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGA
AGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCAC
CGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCA
ATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCT
TCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAAT
CTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAA
TGCTTCAATTTGATCTAAAAAAAAAAAAAAAA
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