CK739749

Overview
NameCK739749
Unique NameCK739749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length382
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.791e-16
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   11 LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 202
            LYPGG F DPLGLA DPE  A+L++ EIK+ RLAM +  GF VQA  TGKGPL N A HL+DP++
Sbjct:  216 LYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280          
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.050e-15
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   11 LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 202
            LYPGG F DPLGLA DP   A+L++ EIK+ RLAM    GF VQA  TGKGPL N A HL+DP++
Sbjct:  213 LYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277          
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.375e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 2
Query:   14 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 205
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HL+DP +N
Sbjct:  185 YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244          
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.001e-12
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 2
Query:    2 TDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 196
            TD  YPGG  FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:  192 TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.001e-12
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 2
Query:    2 TDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 196
            TD  YPGG  FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:  192 TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.226e-12
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 2
Query:   14 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 205
            YPGG F+PL  A   EA    K KEI NGRLAM +  GF +Q  VTGKGP +NL  H++DP +N
Sbjct:  184 YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243          
BLAST of CK739749 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.778e-11
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 2
Query:   11 LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 178
            +YPGG FDPLGLA DPE    LK+ EIK+ RLAM +   F +QA  TGKGP+  LA
Sbjct:  217 IYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272          
The following BLAST results are available for this feature:
BLAST of CK739749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB4A_ARATH7.791e-1663.08Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH5.050e-1561.54Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB24_ARATH1.375e-1257.81Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB12_SOLLC4.001e-1256.72Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY4.001e-1256.72Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PEA5.226e-1254.69Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB4C_ARATH5.778e-1158.93Chlorophyll a-b binding protein CP29.3, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6138 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739749 ID=CK739749; Name=CK739749; organism=Citrus sinensis; type=EST; length=382bp
GACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTG
ATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGA
AGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCAC
CGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCA
ATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCT
TCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAAT
CTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAA
TGCTTCAATTTGATCTAAAAAAAAAAAAAAAA
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