CK739750

Overview
NameCK739750
Unique NameCK739750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739750_ssr17 microsatellite CK739750_ssr17:17..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1150 contig Csv1_Contig1150:388..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739750 vs. ExPASy Swiss-Prot
Match: WRK10_ARATH (Probable WRKY transcription factor 10 OS=Arabidopsis thaliana GN=WRKY10 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 8.833e-27
Identity = 59/113 (52.21%), Postives = 79/113 (69.91%), Query Frame = 3
Query:   42 DDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS 380
            DD     P+ +R+++   S  I A  +RT +  R+++Q  SD D  +DGYRWRKYGQKVVKGNPNPRSY+KCT+  C V+KHVER + +++ V+TTY+G HNH  P AR S S
Sbjct:  266 DDPQPPPPKRRRYEV---SNMIGA--TRTSKTQRIILQMESDEDNPNDGYRWRKYGQKVVKGNPNPRSYFKCTNIECRVKKHVERGADNIKLVVTTYDGIHNHPSPPARRSNS 373          
BLAST of CK739750 vs. ExPASy Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.154e-26
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 3
Query:  123 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNH 350
            R +REPR   QT SD+D+LDDGY+WRKYGQKVVK + +PRSYY+CTH  C V+K VER S D R VITTYEG+HNH
Sbjct:  126 RKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201          
BLAST of CK739750 vs. ExPASy Swiss-Prot
Match: WRK32_ARATH (Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.507e-26
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = 3
Query:   57 DEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAAR 368
            +EPE KR +++ ++   S   S+  ++ + VV    D+ I  DGYRWRKYGQK+VKGNP+PR+YY+CT  GCPVRKH+E A  + +AVI TY+G HNHD+P  +
Sbjct:  291 EEPEPKR-RLKKDNSQSSDSVSKPGKKNKFVVHAAGDVGICGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVENTKAVIITYKGVHNHDMPVPK 393          
BLAST of CK739750 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.268e-25
Identity = 60/120 (50.00%), Postives = 77/120 (64.17%), Query Frame = 3
Query:   54 EDEPEAKRWK-IEGESEGISAPGSRTV-------REPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA-ARGSGSRA 386
            ED  +++R + + GE + IS    +T        REPRV   T S++D L+DGYRWRKYGQK VK +P PRSYY+CT   C V+K VER+  D   VITTYEG+HNH +P   RGS + A
Sbjct:  122 EDSGKSRRKRELVGEEDQISKKVGKTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHPIPTNLRGSSAAA 241          
BLAST of CK739750 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.141e-24
Identity = 50/82 (60.98%), Postives = 59/82 (71.95%), Query Frame = 3
Query:  117 GSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA 362
            G +  RE RV   T S+ID L+DGYRWRKYGQK VK +P PRSYY+CT   C V+K VER+  D   VITTYEGKHNH +P+
Sbjct:  115 GEKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNHPIPS 196          
BLAST of CK739750 vs. ExPASy Swiss-Prot
Match: WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.141e-24
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = 3
Query:  123 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNH 350
            R VREPR   +T S++D+LDDGYRWRKYGQKVVK   +PRSYY+CT   C V+K VER + D R VITTYEG+H H
Sbjct:  204 RKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLH 279          
BLAST of CK739750 vs. ExPASy Swiss-Prot
Match: WRK75_ARATH (Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.537e-23
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 3
Query:   45 DFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDV 356
            +  + E E+ + + EG S+ + +   +  ++ R   QT S +DILDDGYRWRKYGQK VK N  PRSYY+CT+ GC V+K V+R + D   V+TTYEG H+H +
Sbjct:   23 ELHQGEEESSKVRSEGCSKSVES-SKKKGKKQRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVVVTTYEGVHSHPI 125          
BLAST of CK739750 vs. ExPASy Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.738e-23
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  123 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVP 359
            +  RE R    T SDID LDDGYRWRKYGQK VK +P PRSYY+CT  GC V+K VER+S D   V+TTYEG+H H  P
Sbjct:  202 KKAREARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHPFP 280          
BLAST of CK739750 vs. ExPASy Swiss-Prot
Match: WRK45_ARATH (Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.320e-22
Identity = 53/101 (52.48%), Postives = 62/101 (61.39%), Query Frame = 3
Query:   54 EDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDV 356
            E++P +K+ K E              RE R   QT S +DILDDGYRWRKYGQK VK NP PRSYYKCT  GC V+K V+R   D   V+TTY+G H H V
Sbjct:   37 EEKPRSKKKKKE--------------REARYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVVVTTYQGVHTHAV 123          
BLAST of CK739750 vs. ExPASy Swiss-Prot
Match: WRKY8_ARATH (Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.252e-22
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  132 REPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAAR 368
            +EPRV   T +++D L+DGYRWRKYGQK VK +P PRSYY+CT   C V+K VER+  D   VITTYE +HNH +P  R
Sbjct:  167 KEPRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTVVITTYESQHNHPIPTNR 245          
The following BLAST results are available for this feature:
BLAST of CK739750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
WRK10_ARATH8.833e-2752.21Probable WRKY transcription factor 10 OS=Arabidops... [more]
WRK12_ARATH1.154e-2668.42Probable WRKY transcription factor 12 OS=Arabidops... [more]
WRK32_ARATH1.507e-2650.96Probable WRKY transcription factor 32 OS=Arabidops... [more]
WRK28_ARATH8.268e-2550.00Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRK71_ARATH9.141e-2460.98Probable WRKY transcription factor 71 OS=Arabidops... [more]
WRK13_ARATH9.141e-2464.47Probable WRKY transcription factor 13 OS=Arabidops... [more]
WRK75_ARATH4.537e-2347.12Probable WRKY transcription factor 75 OS=Arabidops... [more]
WRK48_ARATH7.738e-2362.03Probable WRKY transcription factor 48 OS=Arabidops... [more]
WRK45_ARATH1.320e-2252.48Probable WRKY transcription factor 45 OS=Arabidops... [more]
WRKY8_ARATH2.252e-2258.23Probable WRKY transcription factor 8 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6139 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739750 ID=CK739750; Name=CK739750; organism=Citrus sinensis; type=EST; length=553bp
CACAGAAGAGTAAATCAGGAGGAGGAGGAGCTGGAGGAGGAGATGATTTT
GATGAAGATGAACCTGAGGCCAAAAGATGGAAAATTGAGGGTGAAAGTGA
AGGCATTTCAGCTCCTGGAAGTAGAACAGTGAGAGAACCAAGAGTTGTTG
TTCAAACCACCAGTGACATTGACATTCTAGATGATGGGTACAGATGGAGG
AAATATGGCCAAAAAGTTGTAAAGGGGAATCCAAATCCAAGGAGTTATTA
CAAGTGTACGCATCCAGGTTGTCCAGTGAGAAAGCATGTTGAGAGAGCAT
CACACGATCTTAGAGCAGTGATCACAACCTATGAGGGAAAGCACAACCAT
GATGTTCCGGCAGCTCGCGGCAGCGGCAGCAGGGCTCTGCCGGATAATAG
CAGCAATAATAACCATAACAGTAACAGCAATAGTAACAACAACGGGACAC
TGCCCGTAAGGGCATCGGCAGTGGCTCATCATCCTAACAACAACTCGATT
CTCAATCCTGTTCACAATCTGAGGGTATCCTCATCTGAAGGCCAAGCACC
CTA
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