CK739752

Overview
NameCK739752
Unique NameCK739752
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739752 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 44/137 (32.12%), Postives = 71/137 (51.82%), Query Frame = 2
Query:   32 GLTASIALEQAG---PASGKKVLVTAAAGGTGQFAVQLAKLAG-NTVVATCGGEHKAQLL-KELGVDRVINYKAEDIKTVFKEEFPKGFDIIYESVGGDMFNLCLKALAVYGRLIVIGMISQYQGEHGWQPSNYPGL 427
            GLT+ I +++ G     S + ++V+ AAG  G  A Q+ +L G + VV  CG   K   L  ELG D  INYK  ++     +  P G D+ +++VGGD+ +  +  +     +I+ G ISQY  +  + P   P +
Sbjct:  137 GLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEKCLFLTSELGFDAAINYKEGNVAEQLHKLCPAGVDVYFDNVGGDISDTVISQMNQNSHIILCGQISQYNKDVPYPPPLPPAI 273          
BLAST of CK739752 vs. ExPASy Swiss-Prot
Match: QORL2_NEMVE (Quinone oxidoreductase-like protein 2 homolog OS=Nematostella vectensis GN=v1g238856 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 56/162 (34.57%), Postives = 81/162 (50.00%), Query Frame = 2
Query:    8 EVVAMLTSGLTASIALE-QAGPASGKKVLVTAAAGGTGQFAVQLAKLAGNTVVATCGGEHKAQLLKELGVDRVINYKAEDIKTVFKE-EFPKGFDIIYESVGGDMFNLCLKALAVYGRLIVIGMISQYQGEHGWQPSNYPGLCEKILAKSQTVAGFFLVQHS 487
            +  A+  S  TA I L+ +A    G+ VLVTAAAG  G  +V LA       V     + K  +++E+G    I+Y  E+IK   KE     G ++I E+VGGD+F  CLK +A  G +I +G  S   GE    P+N       +L K+ +  G +   HS
Sbjct:  154 QAAALAISYGTAYIGLKHKANLQPGQTVLVTAAAGALGLASVDLAANVFGAKVIGASRKEKLVIVQEIGATATIDYTRENIKDKVKELTDGHGANVIMEAVGGDVFKQCLKCIAWNGYIIPVGFAS---GEIPQIPANI------LLVKNCSAVGLYWGAHS 306          
BLAST of CK739752 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 48/126 (38.10%), Postives = 67/126 (53.17%), Query Frame = 2
Query:    8 EVVAMLTSGLTASIALEQAG----PASGKK--VLVTAAAGGTGQFAVQLAKLAGNTVVATCGGEHKAQLLKELGVDRVINYKAEDIKTVFKEEFPKGFDIIYESVGGDMFNLCLKALAVYGRLIVI 367
            E  A+  +GLTA  AL          +GKK  +LVTAA+GG G +AVQLAKLA   V ATCG  +  + +K LG D V++YK  +     K    K +D +     G  F++    L+  G++I I
Sbjct:  127 EAAALPVAGLTALQALTNPAGLKLDGTGKKANILVTAASGGVGHYAVQLAKLANAHVTATCGARN-IEFVKSLGADEVLDYKTPE-GAALKSPSGKKYDAVVHCANGIPFSVFEPNLSENGKVIDI 250          
BLAST of CK739752 vs. ExPASy Swiss-Prot
Match: QORL2_BOVIN (Quinone oxidoreductase-like protein 2 OS=Bos taurus PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.359e-11
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 2
Query:    8 EVVAMLTSGLTASIALE-QAGPASGKKVLVTAAAGGTGQFAVQLA-KLAGNTVVATCGGEHKAQLLKELGVDRVINYKAEDIK-TVFKEEFPKGFDIIYESVGGDMFNLCLKALAVYGRLIVIG 370
            E  A+  S  TA  ALE +A    G+ VLVTAAAG TG   + +A  +    V+A  G + K QL  + G    +NY    +K  V K     G +++ + VGGD+F   L++LA  GR++V+G
Sbjct:  139 EAAALPVSYGTAIFALEHRACTQPGETVLVTAAAGATGLAVIDVATNILQAKVIAAAGSDEKCQLAMQSGAQSSVNYSRGSLKEAVGKLVGSGGVNVVIDMVGGDIFLEALRSLAYEGRIVVVG 262          
The following BLAST results are available for this feature:
BLAST of CK739752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PTGR2_BOVIN1.251e-1232.12Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
QORL2_NEMVE2.787e-1234.57Quinone oxidoreductase-like protein 2 homolog OS=N... [more]
QORH_ARATH1.383e-1138.10Putative quinone-oxidoreductase homolog, chloropla... [more]
QORL2_BOVIN2.359e-1137.10Quinone oxidoreductase-like protein 2 OS=Bos tauru... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6142 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739752 ID=CK739752; Name=CK739752; organism=Citrus sinensis; type=EST; length=495bp
AGATCCAGAAGTTGTTGCCATGCTTACTTCAGGGCTTACAGCTTCAATTG
CTCTGGAACAGGCAGGACCGGCATCTGGAAAAAAGGTGCTTGTTACAGCT
GCTGCTGGGGGGACTGGGCAATTTGCAGTCCAGCTCGCAAAATTAGCAGG
AAATACTGTGGTTGCTACTTGTGGAGGTGAGCATAAGGCCCAGCTTTTGA
AAGAACTGGGAGTTGATCGAGTCATAAACTACAAAGCTGAAGACATTAAA
ACTGTGTTCAAGGAGGAGTTTCCCAAAGGTTTTGACATCATTTATGAATC
TGTTGGTGGTGACATGTTTAATCTTTGCTTGAAGGCTTTGGCAGTTTATG
GACGGCTTATCGTGATTGGAATGATTTCCCAGTATCAAGGAGAACATGGA
TGGCAGCCATCGAATTACCCTGGATTGTGTGAAAAGATTTTAGCAAAAAG
CCAAACTGTGGCTGGCTTTTTCTTGGTACAACACAGTCACCTGTG
back to top