CK739754

Overview
NameCK739754
Unique NameCK739754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  191 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 454
            ++G  V+++F A WCGPCR I P+  E +K++ G +   K + DE   +A +Y + ++PT +  K+G + D V+GA  K  L  +I K
Sbjct:   26 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGA-RKDDLQNTIVK 111          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: PDIA6_RAT (Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 2
Query:  146 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTT 442
            +V  +TD T+   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K    +   +  +A+RYGI+  PT+ IF+ GE      G   +S + +
Sbjct:  161 DVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPVDYDGGRTRSDIVS 263          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: PDIA6_MOUSE (Protein disulfide-isomerase A6 OS=Mus musculus GN=Pdia6 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 2
Query:  146 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTT 442
            +V  +TD T+   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K    +   +  +A+RYGI+  PT+ IF+ GE      G   +S + +
Sbjct:  161 DVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPVDYDGGRTRSDIVS 263          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 30/87 (34.48%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  194 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 454
            S   ++++F A WC PCRMI P+  +L+K+++     +K + DE  ++A  +G+ ++PT ++ K+G   D V+GA  K  L  +I K
Sbjct:   27 SNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGA-RKEDLHATIAK 112          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: PDIA6_PONAB (Protein disulfide-isomerase A6 OS=Pongo abelii GN=PDIA6 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 2
Query:  146 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTT 442
            +V  +TD ++   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K    +   +  +A+RYGIR  PT+ IF+ GE      G   +S + +
Sbjct:  161 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVS 263          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: PDIA6_HUMAN (Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 2
Query:  146 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTT 442
            +V  +TD ++   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K    +   +  +A+RYGIR  PT+ IF+ GE      G   +S + +
Sbjct:  161 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVS 263          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 31/81 (38.27%), Postives = 52/81 (64.20%), Query Frame = 2
Query:  206 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI 448
            V+++F A WCGPCR++ PI  +L+K++   +   K + DE   IA ++ + ++PT +  K G+ KD V+GA+ K  LTT +
Sbjct:   43 VVIDFTASWCGPCRIMAPIFADLAKKFPAAV-FLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAI-KEELTTKV 121          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = 2
Query:  128 AQETAVEVPAVTDATWQSLVL---DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            A E    +   T  TW   +    +S + V+V+F A WCGPCR I P   +L+K+    L   K +TDE  S+A+ + I+++PT M  K G+  D V+GA  K  L ++I K L
Sbjct:    2 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL-FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGA-KKDELQSTIAKHL 113          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 2
Query:  191 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 418
            D+   ++++F+A WCGPCRMI PI ++ S +Y G     K N D +  I  RY I ++PT +  KN ++ D V GA
Sbjct:   20 DANRLIIIDFFANWCGPCRMISPIFEQFSAEY-GNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGA 94          
The following BLAST results are available for this feature:
BLAST of CK739754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
TRXH_ORYSI5.749e-1136.36Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
PDIA6_RAT5.749e-1134.95Protein disulfide-isomerase A6 OS=Rattus norvegicu... [more]
PDIA6_MOUSE5.749e-1134.95Protein disulfide-isomerase A6 OS=Mus musculus GN=... [more]
TRXH2_BRANA7.508e-1134.48Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
PDIA6_PONAB7.508e-1134.95Protein disulfide-isomerase A6 OS=Pongo abelii GN=... [more]
PDIA6_HUMAN7.508e-1134.95Protein disulfide-isomerase A6 OS=Homo sapiens GN=... [more]
TRXH_WHEAT9.806e-1138.27Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH1_ARATH9.806e-1136.84Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
NGLY1_CAEEL9.806e-1140.79Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6144 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739754 ID=CK739754; Name=CK739754; organism=Citrus sinensis; type=EST; length=577bp
CTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCAGACCTG
TTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTCAGACTC
CGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGTTGAAGT
GCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACTCTGGAT
CACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGGATG
ATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAAGCTAAA
ATGCTATAAGGGTAATACTGATGAGAGTCCTTCAATTGCTACTAGATATG
GAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAGAAGAAA
GATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCACCAGCATAGA
GAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGAAACAGGC
TCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTACTATGCCTTGGGTTA
AGATACTTTGCTTTCCACAATAAATTA
back to top