CK739754

Overview
NameCK739754
Unique NameCK739754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_THIFE (Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.454e-22
Identity = 45/101 (44.55%), Postives = 72/101 (71.29%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            V+D ++++ VL S  PVLV+FWA WCGPC+MI PI++E++ +Y  +L+  K N DE+P+   +Y IR IPT+++FK G+ + T +GA+ K+ LT  ++  L
Sbjct:    8 VSDDSFETDVLKSSKPVLVDFWAEWCGPCKMIAPILEEIADEYADRLRVAKFNIDENPNTPPQYAIRGIPTLLLFKAGKLEATKVGALSKAQLTAFLDSQL 108          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_STRCO (Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=1 SV=4)

HSP 1 Score: 103.219 bits (256), Expect = 9.454e-22
Identity = 43/101 (42.57%), Postives = 68/101 (67.33%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            VTD +++  VL +  PVLV+FWA WCGPCR I P ++ ++ +Y  K++  K N DE+P  A +YG+ SIPT+ +++ GE   T++GA PK+ +   +E F+
Sbjct:    8 VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 108          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 8.004e-21
Identity = 45/101 (44.55%), Postives = 70/101 (69.31%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            V D+ +   VL S +PV+V+FWAPWCGPCR+I PI+D+L+ +Y G+L   K NTD++   A++ GI+ IPT++IFK+G +   ++GA P++      +K L
Sbjct:    7 VHDSDFAEKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFKDGREVGRLVGARPEAMYREIFDKVL 107          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.329e-20
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K + DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.329e-20
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K + DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.329e-20
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K + DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.329e-20
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K + DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.329e-20
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K + DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.329e-20
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K + DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.329e-20
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K + DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of CK739754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
THIO_THIFE9.454e-2244.55Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA P... [more]
THIO_STRCO9.454e-2242.57Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=... [more]
THIO_CHLAA8.004e-2144.55Thioredoxin OS=Chloroflexus aurantiacus (strain AT... [more]
THIO_STAAW2.329e-2047.52Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU2.329e-2047.52Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS2.329e-2047.52Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR2.329e-2047.52Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN2.329e-2047.52Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM2.329e-2047.52Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC2.329e-2047.52Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6144 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739754 ID=CK739754; Name=CK739754; organism=Citrus sinensis; type=EST; length=577bp
CTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCAGACCTG
TTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTCAGACTC
CGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGTTGAAGT
GCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACTCTGGAT
CACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGGATG
ATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAAGCTAAA
ATGCTATAAGGGTAATACTGATGAGAGTCCTTCAATTGCTACTAGATATG
GAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAGAAGAAA
GATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCACCAGCATAGA
GAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGAAACAGGC
TCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTACTATGCCTTGGGTTA
AGATACTTTGCTTTCCACAATAAATTA
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