CK739754

Overview
NameCK739754
Unique NameCK739754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739754_ssr512 microsatellite CK739754_ssr512:512..523. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:172..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_HELPY (Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.156e-19
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  209 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            LV+FWAPWCGPC+M+ P+IDEL+ +Y GK K  K NTDE   ++ ++GIRSIPT++  K+GE    ++G   K  L   + K L
Sbjct:   22 LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNKLL 105          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.156e-19
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  209 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            LV+FWAPWCGPC+M+ P+IDEL+ +Y GK K  K NTDE   ++ ++GIRSIPT++  K+GE    ++G   K  L   + K L
Sbjct:   22 LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNKLL 105          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.509e-19
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  209 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            LV+FWA WCGPC+MI P+++EL+  Y GK    K + DE+PS A ++ + SIPT+++FK+GE  D V+G  PK  L   IEK L
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKHL 104          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_THIRO (Thioredoxin (Fragment) OS=Thiocapsa roseopersicina GN=trxA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.971e-19
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDT 406
            VTD +++  VL S  PVLV++WA WCGPC+MI P++DE++ +Y G++K  K N DE+P+   RYGIR IPT+M+ +  E + T
Sbjct:    8 VTDDSFEDEVLKSLEPVLVDYWADWCGPCKMIAPVLDEIAGEYAGRIKVAKLNIDENPNTPRRYGIRGIPTLMLSRQSEVEAT 90          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_STRCL (Thioredoxin OS=Streptomyces clavuligerus GN=trxA PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.971e-19
Identity = 42/93 (45.16%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 436
            VTD T+++ VL S  PVLV+FWA WCGPCR I P ++ ++ ++ G+++  K N D++P+ A +YG+ SIPT+ +++ GE   T++GA PK+ L
Sbjct:    8 VTDDTFEADVLKSEKPVLVDFWAEWCGPCRQIAPSLEAIT-EHGGQIEIVKLNIDQNPATAAKYGVMSIPTLNVYQGGEVVKTIVGAKPKAAL 99          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_RHORU (Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.363e-19
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 451
            V+DA+++  VL +  P  V+FWA WCGPCR   P ++EL+     K+   K N DE+P   ++YG+R IPT+MIFK+G+   T IGA+PK+ L   +E
Sbjct:    4 VSDASFEEDVLKADGPNXVDFWAEWCGPCRQXAPALEELATALGDKVTVAKINIDENPQTPSKYGVRGIPTLMIFKDGQVAATKIGALPKTKLFEWVE 101          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 5.736e-19
Identity = 45/103 (43.69%), Postives = 65/103 (63.11%), Query Frame = 2
Query:  155 AVTDATWQSLVLD-SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            A+  AT QS   + S   VL +FWAPWCGPC+MI P+++EL ++   KLK  K + DE+   A +YG+ SIPT+++ K+GE  +T +G  PK  L   + K L
Sbjct:    2 AIVKATDQSFSAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.491e-19
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  209 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            LV+FWA WCGPC+MI P+++EL+  Y GK    K + DE+PS A ++ + SIPT+++FK+GE  D V+G  PK  L   ++K L
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_BUCBP (Thioredoxin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trxA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.669e-18
Identity = 40/101 (39.60%), Postives = 66/101 (65.35%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            +TD  ++  +L+S   VLV+FWA WC PC+++ PI+++++K+Y  KL   K N D++P+ A +Y IR IP +++FKN E   T +GA+ K  L   +  +L
Sbjct:    8 LTDGIFKQYILESKKAVLVDFWAEWCNPCKILAPILEDIAKEYEHKLIVTKINIDKNPNTAPKYSIRGIPALLLFKNSELVGTKVGALSKVQLKDFLNLYL 108          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_BUCAI (Thioredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trxA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.180e-18
Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = 2
Query:  158 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 454
            +TD  ++  VL+S S  LV+FWA WC PC+++ PI++E+SK+Y  K+   K N +E+P+ A  Y IRSIPT+++F N E   T +GAV K  L   +++
Sbjct:    7 LTDQNFEEQVLNSKSFFLVDFWAQWCNPCKILAPILEEISKEYSNKVIVGKLNIEENPNTAPVYSIRSIPTLLLFNNSEVLATKVGAVSKLELKEFLDE 105          
The following BLAST results are available for this feature:
BLAST of CK739754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
THIO_HELPY1.156e-1948.81Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV... [more]
THIO_HELPJ1.156e-1948.81Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
THIO_STAS11.509e-1950.00Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_THIRO1.971e-1949.40Thioredoxin (Fragment) OS=Thiocapsa roseopersicina... [more]
THIO_STRCL1.971e-1945.16Thioredoxin OS=Streptomyces clavuligerus GN=trxA P... [more]
THIO_RHORU3.363e-1944.90Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 ... [more]
THIO_BACSU5.736e-1943.69Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
THIO_STAHJ7.491e-1947.62Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO_BUCBP1.669e-1839.60Thioredoxin OS=Buchnera aphidicola subsp. Baizongi... [more]
THIO_BUCAI2.180e-1843.43Thioredoxin OS=Buchnera aphidicola subsp. Acyrthos... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6144 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739754 ID=CK739754; Name=CK739754; organism=Citrus sinensis; type=EST; length=577bp
CTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCAGACCTG
TTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTCAGACTC
CGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGTTGAAGT
GCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACTCTGGAT
CACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGGATG
ATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAAGCTAAA
ATGCTATAAGGGTAATACTGATGAGAGTCCTTCAATTGCTACTAGATATG
GAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAGAAGAAA
GATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCACCAGCATAGA
GAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGAAACAGGC
TCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTACTATGCCTTGGGTTA
AGATACTTTGCTTTCCACAATAAATTA
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