CK739754

Overview
NameCK739754
Unique NameCK739754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739754_ssr512 microsatellite CK739754_ssr512:512..523. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:172..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_BORBU (Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 28/85 (32.94%), Postives = 51/85 (60.00%), Query Frame = 2
Query:  203 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 457
            P +++F+A WCGPC+M+ PI ++LSK+Y   +  YK +TD+   I++  G++S+PT++      K    +G + +      I+ F
Sbjct:   30 PAIIDFYANWCGPCKMLSPIFEKLSKKYENSIDFYKVDTDKEQDISSAIGVQSLPTILFIPVDGKPKVSVGFLQEDAFENIIKDF 114          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 2
Query:  194 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 418
            SG  V+++F+A WCGPC+MI P + ELS QY   +   K + DE   IA  Y I S+PT +  KNG K +   GA
Sbjct:   19 SGKLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGA 93          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO2_CAEEL (Probable thioredoxin-2 OS=Caenorhabditis elegans GN=trx-2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 2
Query:  146 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            ++ +V D T +  V+ S  PV+V+F A WCGPC+ + P ++E      G +   K N D +  +A  YGI ++PTV  FKNGEK     G +    L   IE  L
Sbjct:   41 DIDSVEDFTEK--VIQSSVPVIVDFHAEWCGPCQALGPRLEEKVNGRQGSVLLAKINVDHAGELAMDYGISAVPTVFAFKNGEKISGFSGVLDDEQLDDFIEDVL 143          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.791e-12
Identity = 30/96 (31.25%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  173 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   K + D+   +A  Y + ++PTV+  KNG+  D  +G   +  L   ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.791e-12
Identity = 30/96 (31.25%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  173 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   K + D+   +A  Y + ++PTV+  KNG+  D  +G   +  L   ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.791e-12
Identity = 30/96 (31.25%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  173 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   K + D+   +A  Y + ++PTV+  KNG+  D  +G   +  L   ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12
Identity = 31/73 (42.47%), Postives = 52/73 (71.23%), Query Frame = 2
Query:  206 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 424
            V+V+F+A WCGPC+MI P+I++ S+QY  +   YK + DE   +A +  + ++PT+++FKNG++   V+GA P
Sbjct:   21 VVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANP 92          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  149 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 457
            V  VT       ++     V+V+F+A WCGPC+ I P  +E SK Y  K+   K + DE   +  +  I S+PT  ++KNG   DT++GA   S L   IEK+
Sbjct:    2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEKY 102          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12
Identity = 29/80 (36.25%), Postives = 47/80 (58.75%), Query Frame = 2
Query:  176 QSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIG 415
            Q L+L     V+++F+A WCGPC++I P +DEL+ +Y  ++   K N DE+  I   Y + S+PT +  K G   +  +G
Sbjct:   13 QQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVG 92          
BLAST of CK739754 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12
Identity = 30/96 (31.25%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  173 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKGNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 460
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   K + D+   +A  Y + ++PTV+  KNG+  D  +G   +  L   ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
The following BLAST results are available for this feature:
BLAST of CK739754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
THIO_BORBU3.981e-1232.94Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 S... [more]
THIO2_DROYA3.981e-1245.33Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO2_CAEEL3.981e-1237.14Probable thioredoxin-2 OS=Caenorhabditis elegans G... [more]
THIOM_RAT6.791e-1231.25Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE6.791e-1231.25Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN6.791e-1231.25Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
TRX1_YEAST8.869e-1242.47Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
THIO_PLAF78.869e-1236.89Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIOT_DROME8.869e-1236.25Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
THIOM_BOVIN8.869e-1231.25Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6144 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739754 ID=CK739754; Name=CK739754; organism=Citrus sinensis; type=EST; length=577bp
CTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCAGACCTG
TTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTCAGACTC
CGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGTTGAAGT
GCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACTCTGGAT
CACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGGATG
ATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAAGCTAAA
ATGCTATAAGGGTAATACTGATGAGAGTCCTTCAATTGCTACTAGATATG
GAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAGAAGAAA
GATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCACCAGCATAGA
GAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGAAACAGGC
TCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTACTATGCCTTGGGTTA
AGATACTTTGCTTTCCACAATAAATTA
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