CK739757

Overview
NameCK739757
Unique NameCK739757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length250
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13665 contig Csv1_Contig13665:47..293. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.617e-29
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGLT + LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVG
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.617e-29
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGLT + LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVG
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 6.030e-29
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG++F+KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE+VTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGVSFSKLFSNLFGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.030e-29
Identity = 63/69 (91.30%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG  F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 6.030e-29
Identity = 63/69 (91.30%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG  F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.030e-29
Identity = 63/69 (91.30%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG  F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.876e-29
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGLT + +FSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVG
Sbjct:    1 MGLTVSAIFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.029e-28
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGL+ +KLF  LF K+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+NISFTVWDVG
Sbjct:    1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.343e-28
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGL+ +KL + LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGLSVSKLLNGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 124.79 bits (312), Expect = 1.343e-28
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGLT +KLF+ L  ++EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGLTISKLFASLLGRREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
The following BLAST results are available for this feature:
BLAST of CK739757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
ARF5_MOUSE4.617e-2989.86ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN4.617e-2989.86ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF_ASHGO6.030e-2986.96ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF2_RAT6.030e-2991.30ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE6.030e-2991.30ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]
ARF2_BOVIN6.030e-2991.30ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]
ARF5_CHICK7.876e-2988.41ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF1_SCHPO1.029e-2888.41ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF_CRYNE1.343e-2889.86ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF_CANAL1.343e-2888.41ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6147 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739757 ID=CK739757; Name=CK739757; organism=Citrus sinensis; type=EST; length=250bp
CTCTCTCGCGTTCTCTGAAGATAGTGATCCCCAGCTGGAAGAATGGGGCT
GACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCGAA
TTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACAAG
CTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAATGT
GGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGGTG
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