CK739757

Overview
NameCK739757
Unique NameCK739757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length250
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13665 contig Csv1_Contig13665:47..293. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 9.627e-27
Identity = 60/69 (86.96%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 9.627e-27
Identity = 60/69 (86.96%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 9.627e-27
Identity = 60/69 (86.96%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.257e-26
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 1
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG   +K+F +LF+KKE+RILMVGLDAAGKTTILYKL LGE+VTT+PTIGFNVETVEYKNI+FTVWDVG
Sbjct:    1 MGQGASKIFGKLFSKKEVRILMVGLDAAGKTTILYKLMLGEVVTTVPTIGFNVETVEYKNINFTVWDVG 69          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.301e-23
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1
Query:   55 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            F+K FSRLF+ KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F VWDVG
Sbjct:    9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVG 73          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.219e-23
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            K+FS++F  KEMRILM GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVG
Sbjct:    3 KMFSKIFGNKEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVG 65          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 2.219e-23
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            KL S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVG
Sbjct:    3 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVG 65          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.786e-23
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG  F+++  R   K ++RILMVGLD +GKTTILYKLKLGE+VTT+PTIGFN+ETVEYK I+FTVWD+G
Sbjct:    1 MGARFSRIAKRFLPKSKVRILMVGLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYKGINFTVWDIG 69          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 4.944e-23
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVG
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVG 65          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.944e-23
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVG
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVG 65          
The following BLAST results are available for this feature:
BLAST of CK739757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
ARF3_MOUSE9.627e-2786.96ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN9.627e-2786.96ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN9.627e-2786.96ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF_GIALA1.257e-2681.16ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF2_SCHPO1.301e-2380.00Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARF6_XENLA2.219e-2379.37ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF3_DROME2.219e-2379.37ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF4_ARATH3.786e-2369.57Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF6_RAT4.944e-2377.78ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG4.944e-2377.78ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6147 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739757 ID=CK739757; Name=CK739757; organism=Citrus sinensis; type=EST; length=250bp
CTCTCTCGCGTTCTCTGAAGATAGTGATCCCCAGCTGGAAGAATGGGGCT
GACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCGAA
TTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACAAG
CTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAATGT
GGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGGTG
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