CK739757

Overview
NameCK739757
Unique NameCK739757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length250
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 4.944e-23
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVG
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVG 65          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 4.944e-23
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVG
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVG 65          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 4.944e-23
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1
Query:   61 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVG
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVG 65          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.434e-23
Identity = 47/69 (68.12%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG+ FT++FS +F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 69          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 8.434e-23
Identity = 47/69 (68.12%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG+ FT++FS +F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 69          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.879e-22
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+G
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLG 69          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.879e-22
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+G
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLG 69          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.879e-22
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+G
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLG 69          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.879e-22
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+G
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLG 69          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.454e-22
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1
Query:   55 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            F+ +FS    KKE RILM+GLD AGK+T+LYKLKLG++V+TIPTIGFNVET+EYKN+S TVWDVG
Sbjct:   13 FSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVSTIPTIGFNVETIEYKNLSMTVWDVG 77          
The following BLAST results are available for this feature:
BLAST of CK739757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
ARF6_MOUSE4.944e-2377.78ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN4.944e-2377.78ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_CHICK4.944e-2377.78ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF3_ARATH8.434e-2368.12ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP8.434e-2368.12ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARL1_RAT1.879e-2269.57ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE1.879e-2269.57ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARL1_HUMAN1.879e-2269.57ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARL1_BOVIN1.879e-2269.57ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARFJ_DICDI2.454e-2272.31ADP-ribosylation factor J OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6147 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739757 ID=CK739757; Name=CK739757; organism=Citrus sinensis; type=EST; length=250bp
CTCTCTCGCGTTCTCTGAAGATAGTGATCCCCAGCTGGAAGAATGGGGCT
GACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCGAA
TTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACAAG
CTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAATGT
GGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGGTG
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