CK739757

Overview
NameCK739757
Unique NameCK739757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length250
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13665 contig Csv1_Contig13665:47..293. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.467e-22
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 1
Query:   55 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            F+ +FS    KK+ RILM+GLD AGK+T+LYKLKLG+IV+T+PTIGFNVET+EYKN+S TVWDVG
Sbjct:   13 FSNIFSLFEGKKQTRILMIGLDGAGKSTLLYKLKLGDIVSTVPTIGFNVETIEYKNLSMTVWDVG 77          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARL17_HUMAN (ADP-ribosylation factor-like protein 17 OS=Homo sapiens GN=ARL17 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.894e-21
Identity = 48/69 (69.57%), Postives = 54/69 (78.26%), Query Frame = 1
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG  F KLF  L  KK+MRIL++ LD AGKTTILYKLKLGE V  +PT+GF VETVEYKN +F VWDVG
Sbjct:    1 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKNNTFAVWDVG 69          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.894e-21
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG + +K+  +LF  KEM+ILM+GLD AGKTTILYKLKL +I T+ PT+GFNVETV YKN+ F +WDVG
Sbjct:    1 MGNSISKVLGKLFGSKEMKILMLGLDKAGKTTILYKLKLNKIKTSTPTVGFNVETVTYKNVKFNMWDVG 69          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.759e-20
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1
Query:   55 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            F+ +FS    KK+ RILM+GLD AGK+T+L+KLKLG++V TIPTIGFNVET+ YKN+S TVWDVG
Sbjct:   13 FSNIFSLFEGKKDTRILMIGLDGAGKSTLLFKLKLGDVVLTIPTIGFNVETIVYKNLSMTVWDVG 77          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.918e-20
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 1
Query:   67 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            F  LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVE VEYKN+ F VWD+G
Sbjct:    8 FRGLFGAREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVEYKNLKFQVWDLG 68          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.140e-19
Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = 1
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGL F+K+ S +F   E R LM+GLD AGKTTILYKLKL E V TIPTIGFNVETV ++ I+ TVWDVG
Sbjct:    1 MGLFFSKISSFMFPNIECRTLMLGLDGAGKTTILYKLKLNETVNTIPTIGFNVETVTFQKITLTVWDVG 69          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 93.9745 bits (232), Expect = 2.539e-19
Identity = 43/70 (61.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   43 MGLTFTKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MG  F+ +F +L+ + KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YKN+   VWD+G
Sbjct:    1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLG 70          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARFF_DICDI (ADP-ribosylation factor F OS=Dictyostelium discoideum GN=arrF PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.539e-19
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1
Query:   55 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            F  +FS    K+ +RILM+GLD AGK+T+LYKLK G+++ TIPTIGFNVE +EYKN+S  VWD+G
Sbjct:   13 FVNIFSLFEGKRNIRILMIGLDGAGKSTLLYKLKFGDVIRTIPTIGFNVEIIEYKNLSMNVWDIG 77          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 92.4337 bits (228), Expect = 7.388e-19
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 1
Query:   67 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            F  L   +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVE V YKN+ F VWD+G
Sbjct:    8 FRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLG 68          
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.915e-17
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1
Query:   49 LTFTKLFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            +TFTK  +R++   K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVG
Sbjct:  369 VTFTK-DNRVYIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVG 436          
The following BLAST results are available for this feature:
BLAST of CK739757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
ARFH_DICDI5.467e-2270.77ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARL17_HUMAN7.894e-2169.57ADP-ribosylation factor-like protein 17 OS=Homo sa... [more]
ARF3_YEAST7.894e-2165.22ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]
ARFK_DICDI1.759e-2067.69ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARL1_CAEEL3.918e-2072.13ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]
ARF11_CAEEL1.140e-1968.12ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]
ARL1_YEAST2.539e-1961.43ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARFF_DICDI2.539e-1961.54ADP-ribosylation factor F OS=Dictyostelium discoid... [more]
ARL1_DROME7.388e-1968.85ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]
ARD1_RAT6.915e-1762.32GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6147 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739757 ID=CK739757; Name=CK739757; organism=Citrus sinensis; type=EST; length=250bp
CTCTCTCGCGTTCTCTGAAGATAGTGATCCCCAGCTGGAAGAATGGGGCT
GACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCGAA
TTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACAAG
CTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAATGT
GGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGGTG
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