CK739762

Overview
NameCK739762
Unique NameCK739762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PSEAE (Elongation factor Tu OS=Pseudomonas aeruginosa GN=tufA PE=3 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.114e-50
Identity = 99/145 (68.28%), Postives = 113/145 (77.93%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LDE  AG+NVG+LLRG ++ D++RG VLAKPGTI PHTKF   VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD IKMVV LI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  258 TCTGVEMFRKLLDEGRAGENVGILLRGTKREDVERGQVLAKPGTIKPHTKFECEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIKMVVTLIAPIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PSEAB (Elongation factor Tu OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.114e-50
Identity = 99/145 (68.28%), Postives = 113/145 (77.93%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LDE  AG+NVG+LLRG ++ D++RG VLAKPGTI PHTKF   VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD IKMVV LI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  258 TCTGVEMFRKLLDEGRAGENVGILLRGTKREDVERGQVLAKPGTIKPHTKFECEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIKMVVTLIAPIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PSEA7 (Elongation factor Tu OS=Pseudomonas aeruginosa (strain PA7) GN=tuf1 PE=3 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.114e-50
Identity = 99/145 (68.28%), Postives = 113/145 (77.93%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LDE  AG+NVG+LLRG ++ D++RG VLAKPGTI PHTKF   VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD IKMVV LI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  258 TCTGVEMFRKLLDEGRAGENVGILLRGTKREDVERGQVLAKPGTIKPHTKFECEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIKMVVTLIAPIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_GEOMG (Elongation factor Tu OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.114e-50
Identity = 97/145 (66.90%), Postives = 116/145 (80.00%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE  AGDN+G LLRGV++ DI+RG VLA+PG+ITPHTKF A  Y+L KEEGGRH+PFF GYRPQFY RTTDVTG V     D    ++MVMPGD + + V LI P+A ++G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  257 TVTGVEMFRKLLDEGRAGDNIGALLRGVKREDIERGQVLARPGSITPHTKFKAEAYILTKEEGGRHTPFFNGYRPQFYFRTTDVTGIV-----DLPAGTEMVMPGDNVAVTVNLITPIAMDEGLRFAIREGGRTVGAGVVSSIIE 396          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PELPD (Elongation factor Tu OS=Pelobacter propionicus (strain DSM 2379) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.455e-50
Identity = 96/145 (66.21%), Postives = 116/145 (80.00%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE  AGDN+G LLRG+++ +I+RG VLAKPG+ITPHTKF A  Y+L KEEGGRH+PFF GYRPQFY RTTDVTG V     D    ++MVMPGD + + V LI P+A ++G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  257 TVTGVEMFRKLLDEGRAGDNIGALLRGIKREEIERGQVLAKPGSITPHTKFKAEAYILNKEEGGRHTPFFNGYRPQFYFRTTDVTGIV-----DLPAGTEMVMPGDNVAVTVNLITPIAMDEGLRFAIREGGRTVGAGVVSSIIE 396          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_GEOUR (Elongation factor Tu OS=Geobacter uraniireducens (strain Rf4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.455e-50
Identity = 97/145 (66.90%), Postives = 115/145 (79.31%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE  AGDN+G LLRGV++ DI+RG VLAKPG+ITPHTKF A  Y+L KEEGGRH+PFF GYRPQFY RTTDVTG V          ++MVMPGD + + V LI P+A ++G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  257 TVTGVEMFRKLLDEGRAGDNIGALLRGVKREDIERGQVLAKPGSITPHTKFKAEAYILTKEEGGRHTPFFNGYRPQFYFRTTDVTGIVELAAG-----TEMVMPGDNVAVTVNLITPIAMDEGLRFAIREGGRTVGAGVVSSIIE 396          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_DICNV (Elongation factor Tu OS=Dichelobacter nodosus (strain VCS1703A) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.455e-50
Identity = 96/145 (66.21%), Postives = 116/145 (80.00%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LD+  AGDNVG+LLRG ++ +++RG VLAKPGTITPHTKF + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG          E  +MVMPGD +KM+V+LI P+A ++G+RFAIREGG+TVGAGV+  IIE
Sbjct:  257 TCTGVEMFRKLLDQGQAGDNVGVLLRGTKREEVERGQVLAKPGTITPHTKFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGECV-----LPEGVEMVMPGDNVKMIVQLIHPIAMDEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CHLL2 (Elongation factor Tu OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.455e-50
Identity = 96/144 (66.67%), Postives = 116/144 (80.56%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMFQK LDE  AGDN GLLLRGV K +++RGMV+AKPG+I PHTKF A VY+L+KEEGGRH+PFF GYRPQFY RTTDVTG V+       E  +MVMPGD + + VELI+P+A ++G+RFAIREGG+TVGAG +  IIE
Sbjct:  255 VTGIEMFQKLLDEGQAGDNAGLLLRGVDKTELERGMVIAKPGSIKPHTKFKAEVYILRKEEGGRHTPFFNGYRPQFYFRTTDVTGSVT-----LPEGVEMVMPGDNLSVEVELIVPIAMDEGLRFAIREGGRTVGAGSVTKIIE 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CHLAU (Elongation factor Tu (Fragment) OS=Chloroflexus aurantiacus GN=tuf PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.455e-50
Identity = 95/144 (65.97%), Postives = 116/144 (80.56%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTGVEMFQKTLDE +AGDNVG LLRG+++ D++RG VL  PG+I PH KF A VYVLKKEEGGRH+PFF+GYRPQFY+RTTDVTG +           +MVMPGD + M +ELI+PVA E+G+RFAIREGG+TVGAGV+  I++
Sbjct:  244 VTGVEMFQKTLDEGIAGDNVGCLLRGIERTDVERGQVLCAPGSIKPHKKFEAQVYVLKKEEGGRHTPFFSGYRPQFYIRTTDVTGAIG-----LPAGMEMVMPGDNVVMTIELIVPVAIEEGLRFAIREGGRTVGAGVVTKILD 382          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CHLAA (Elongation factor Tu OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.455e-50
Identity = 95/144 (65.97%), Postives = 116/144 (80.56%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTGVEMFQKTLDE +AGDNVG LLRG+++ D++RG VL  PG+I PH KF A VYVLKKEEGGRH+PFF+GYRPQFY+RTTDVTG +           +MVMPGD + M +ELI+PVA E+G+RFAIREGG+TVGAGV+  I++
Sbjct:  263 VTGVEMFQKTLDEGIAGDNVGCLLRGIERTDVERGQVLCAPGSIKPHKKFEAQVYVLKKEEGGRHTPFFSGYRPQFYIRTTDVTGAIG-----LPAGMEMVMPGDNVVMTIELIVPVAIEEGLRFAIREGGRTVGAGVVTKILD 401          
The following BLAST results are available for this feature:
BLAST of CK739762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PSEAE1.114e-5068.28Elongation factor Tu OS=Pseudomonas aeruginosa GN=... [more]
EFTU_PSEAB1.114e-5068.28Elongation factor Tu OS=Pseudomonas aeruginosa (st... [more]
EFTU_PSEA71.114e-5068.28Elongation factor Tu OS=Pseudomonas aeruginosa (st... [more]
EFTU_GEOMG1.114e-5066.90Elongation factor Tu OS=Geobacter metallireducens ... [more]
EFTU_PELPD1.455e-5066.21Elongation factor Tu OS=Pelobacter propionicus (st... [more]
EFTU_GEOUR1.455e-5066.90Elongation factor Tu OS=Geobacter uraniireducens (... [more]
EFTU_DICNV1.455e-5066.21Elongation factor Tu OS=Dichelobacter nodosus (str... [more]
EFTU_CHLL21.455e-5066.67Elongation factor Tu OS=Chlorobium limicola (strai... [more]
EFTU_CHLAU1.455e-5065.97Elongation factor Tu (Fragment) OS=Chloroflexus au... [more]
EFTU_CHLAA1.455e-5065.97Elongation factor Tu OS=Chloroflexus aurantiacus (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6152 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739762 ID=CK739762; Name=CK739762; organism=Citrus sinensis; type=EST; length=545bp
AATTTCACTGTAACTGGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGC
AATGGCTGGGGATAATGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTG
ATATTCAGAGAGGGATGGTGTTGGCCAAGCCCGGAACAATTACTCCCCAT
ACTAAGTTCCTTGCCATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAG
GCACTCACCTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCA
CTGATGTGACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAG
TCCAAGATGGTTATGCCTGGTGACCGTATCAAGATGGTTGTGGAGCTTAT
TATGCCAGTGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAG
GAAAGACTGTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTAC
TAGGAACTTTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTT
AAACTTCATATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCT
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