CK739762

Overview
NameCK739762
Unique NameCK739762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PROA2 (Elongation factor Tu OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.901e-50
Identity = 95/144 (65.97%), Postives = 115/144 (79.86%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMFQKTLD+  AGDN G+L RGV K +++RGMV+AKPGTITPHTKF A VY+LKKEEGGRH+PFF  YRPQFY RTTDVTG V+       E  +MVMPGD + + VELI+P+A ++ +RFAIREGG+TVGAG +  IIE
Sbjct:  255 VTGIEMFQKTLDQGQAGDNAGILFRGVDKEELERGMVIAKPGTITPHTKFKAEVYILKKEEGGRHTPFFNNYRPQFYFRTTDVTGAVT-----LPEGVEMVMPGDNLSVEVELIVPIAMDENLRFAIREGGRTVGAGTVTQIIE 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_KOSOT (Elongation factor Tu OS=Kosmotoga olearia (strain TBF 19.5.1) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.901e-50
Identity = 99/144 (68.75%), Postives = 115/144 (79.86%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTGVEMF+K LDE +AGDNVG LLRGV K +++RG VLAKPG+ITPH KF A +YVLKKEEGGRH+PF  GYRPQFY+RT DVTG     + D  E  +MVMPGD + M VELI PVA E+GMRFA+REGG+TVGAGV+  IIE
Sbjct:  260 VTGVEMFRKLLDEGVAGDNVGCLLRGVGKDEVKRGQVLAKPGSITPHKKFKANIYVLKKEEGGRHTPFTKGYRPQFYIRTADVTGE----LVDLPEGVEMVMPGDNVVMTVELIYPVAIEKGMRFAVREGGRTVGAGVVSEIIE 399          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_GEMAT (Elongation factor Tu OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.901e-50
Identity = 97/143 (67.83%), Postives = 115/143 (80.42%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            VTGVEMF+K LDE  AGDNVGLLLRGV K DI+RGMVLAKP +I PHTKF + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD ++M +ELI+P+A E+ +RFAIREGG+TVGAGV+  I+
Sbjct:  262 VTGVEMFRKLLDEGQAGDNVGLLLRGVDKKDIERGMVLAKPNSIKPHTKFHSEVYVLTKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGMEMVMPGDNVQMTIELIIPIAMEEQLRFAIREGGRTVGAGVVTKIL 399          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_COXBU (Elongation factor Tu OS=Coxiella burnetii GN=tufA PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.901e-50
Identity = 95/145 (65.52%), Postives = 117/145 (80.69%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LDE  AGDNVG+LLRG ++ +++RG VLAKPG+ITPH KF A +YVL KEEGGRH+PF  GYRPQFY RTTDVTG++ S+     E  +MVMPGD +K+ VELI PVA ++G+RFA+REGG+TVGAGV+  IIE
Sbjct:  257 TCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVLAKPGSITPHKKFEAEIYVLSKEEGGRHTPFLQGYRPQFYFRTTDVTGQLLSL----PEGIEMVMPGDNVKVTVELIAPVAMDEGLRFAVREGGRTVGAGVVTKIIE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_COXBR (Elongation factor Tu OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.901e-50
Identity = 95/145 (65.52%), Postives = 117/145 (80.69%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LDE  AGDNVG+LLRG ++ +++RG VLAKPG+ITPH KF A +YVL KEEGGRH+PF  GYRPQFY RTTDVTG++ S+     E  +MVMPGD +K+ VELI PVA ++G+RFA+REGG+TVGAGV+  IIE
Sbjct:  257 TCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVLAKPGSITPHKKFEAEIYVLSKEEGGRHTPFLQGYRPQFYFRTTDVTGQLLSL----PEGIEMVMPGDNVKVTVELIAPVAMDEGLRFAVREGGRTVGAGVVTKIIE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_COXBN (Elongation factor Tu OS=Coxiella burnetii (strain Dugway 5J108-111) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.901e-50
Identity = 95/145 (65.52%), Postives = 117/145 (80.69%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LDE  AGDNVG+LLRG ++ +++RG VLAKPG+ITPH KF A +YVL KEEGGRH+PF  GYRPQFY RTTDVTG++ S+     E  +MVMPGD +K+ VELI PVA ++G+RFA+REGG+TVGAGV+  IIE
Sbjct:  257 TCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVLAKPGSITPHKKFEAEIYVLSKEEGGRHTPFLQGYRPQFYFRTTDVTGQLLSL----PEGIEMVMPGDNVKVTVELIAPVAMDEGLRFAVREGGRTVGAGVVTKIIE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CODFR (Elongation factor Tu, chloroplastic OS=Codium fragile GN=tufA PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.901e-50
Identity = 96/145 (66.21%), Postives = 119/145 (82.07%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE-ESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            +TG+EMF KTL++++AGDNVG+LLR +QK +IQRGMVLAKP +I PH  F A VY+LKKEEGGRH+ FFAGYRPQFY+RTTDVTG + +     D  + +MVMPGDRI+M VELI P+A E  MRFAIREGGKTVGAGV+ +I++
Sbjct:  265 ITGLEMFHKTLEKSVAGDNVGILLRRIQKEEIQRGMVLAKPSSILPHQHFKAQVYILKKEEGGRHTSFFAGYRPQFYVRTTDVTGHIKTFQGKIDNTQIQMVMPGDRIQMEVELIRPIAIETRMRFAIREGGKTVGAGVVTTIVQ 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_ACTSZ (Elongation factor Tu OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.901e-50
Identity = 95/145 (65.52%), Postives = 117/145 (80.69%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE  AG+N+G LLRG ++ +I+RG VLAKPG+ITPHT F++ VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A +QG+RFAIREGG+TVGAGV+ S+I+
Sbjct:  255 TVTGVEMFRKLLDEGRAGENIGALLRGTKREEIERGQVLAKPGSITPHTDFVSEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVASVIK 394          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBM (Elongation factor Tu OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.482e-50
Identity = 97/143 (67.83%), Postives = 115/143 (80.42%), Query Frame = 1
Query:   13 TGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TG+EMF+K LDEAMAGDN+G LLRG+Q+ +IQRG VLAKPG+ITPH KF+  VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD I M VELI PVA  + +RFAIREGG+TVG+GV+ +I E
Sbjct:  260 TGIEMFRKILDEAMAGDNIGALLRGIQRDEIQRGQVLAKPGSITPHKKFVGQVYVLKKEEGGRHTPFFNGYRPQFYFRTTDVTGSI-----NLPEGVEMVMPGDHIDMAVELITPVAMHENLRFAIREGGRTVGSGVVTTISE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_ANOFW (Elongation factor Tu OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=tuf PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.482e-50
Identity = 98/145 (67.59%), Postives = 115/145 (79.31%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LD+A AGDN+G LLRGV + ++QRG VLAKPGTITPHTKF A VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG +        E  +MVMPGD I+M VELI P+A E+G +F+IREGG+TVGAG +  IIE
Sbjct:  256 TVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEVQRGQVLAKPGTITPHTKFKAQVYVLTKEEGGRHTPFFSNYRPQFYFRTTDVTGII-----QLPEGVEMVMPGDNIEMTVELIAPIAIEEGTKFSIREGGRTVGAGSVSEIIE 395          
The following BLAST results are available for this feature:
BLAST of CK739762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PROA21.901e-5065.97Elongation factor Tu OS=Prosthecochloris aestuarii... [more]
EFTU_KOSOT1.901e-5068.75Elongation factor Tu OS=Kosmotoga olearia (strain ... [more]
EFTU_GEMAT1.901e-5067.83Elongation factor Tu OS=Gemmatimonas aurantiaca (s... [more]
EFTU_COXBU1.901e-5065.52Elongation factor Tu OS=Coxiella burnetii GN=tufA ... [more]
EFTU_COXBR1.901e-5065.52Elongation factor Tu OS=Coxiella burnetii (strain ... [more]
EFTU_COXBN1.901e-5065.52Elongation factor Tu OS=Coxiella burnetii (strain ... [more]
EFTU_CODFR1.901e-5066.21Elongation factor Tu, chloroplastic OS=Codium frag... [more]
EFTU_ACTSZ1.901e-5065.52Elongation factor Tu OS=Actinobacillus succinogene... [more]
EFTU_CLOBM2.482e-5067.83Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_ANOFW2.482e-5067.59Elongation factor Tu OS=Anoxybacillus flavithermus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6152 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739762 ID=CK739762; Name=CK739762; organism=Citrus sinensis; type=EST; length=545bp
AATTTCACTGTAACTGGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGC
AATGGCTGGGGATAATGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTG
ATATTCAGAGAGGGATGGTGTTGGCCAAGCCCGGAACAATTACTCCCCAT
ACTAAGTTCCTTGCCATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAG
GCACTCACCTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCA
CTGATGTGACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAG
TCCAAGATGGTTATGCCTGGTGACCGTATCAAGATGGTTGTGGAGCTTAT
TATGCCAGTGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAG
GAAAGACTGTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTAC
TAGGAACTTTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTT
AAACTTCATATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCT
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