CK739762

Overview
NameCK739762
Unique NameCK739762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_VIBPA (Elongation factor Tu OS=Vibrio parahaemolyticus GN=tufA PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.242e-50
Identity = 97/145 (66.90%), Postives = 116/145 (80.00%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LDE  AG+NVG LLRG ++ +++RG VLAKPG+ITPHTKF + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +S       E  +MVMPGD I+MVVELI P+A ++G+RFAIREGG+TVGAGV+  I E
Sbjct:  255 TCTGVEMFRKLLDEGRAGENVGALLRGTKRDEVERGQVLAKPGSITPHTKFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGDIS-----LPEGVEMVMPGDNIQMVVELIAPIAMDEGLRFAIREGGRTVGAGVVAKIFE 394          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PROVI (Elongation factor Tu OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=tuf PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.242e-50
Identity = 97/142 (68.31%), Postives = 112/142 (78.87%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 435
            VTG+EMFQK LDE  AGDN GLLLRGV K D++RGMV+AKPGTI PHTKF A VY+LKKEEGGRH+PFF  YRPQFY RTTDVTG VS       E  +MVMPGD + + VELI P+A ++G+RFAIREGG+TVGAG +  I
Sbjct:  255 VTGIEMFQKLLDEGQAGDNAGLLLRGVDKNDLERGMVIAKPGTIKPHTKFKAEVYILKKEEGGRHTPFFTNYRPQFYFRTTDVTGAVS-----LPEGVEMVMPGDNLSVEVELIAPIAMDEGLRFAIREGGRTVGAGSVTKI 391          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBL (Elongation factor Tu OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.242e-50
Identity = 96/143 (67.13%), Postives = 115/143 (80.42%), Query Frame = 1
Query:   13 TGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TG+EMF+K LDEAMAGDN+G LLRG+Q+ +IQRG VLAKPG++TPH KF+  VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD I M VELI PVA  + +RFAIREGG+TVG+GV+ +I E
Sbjct:  260 TGIEMFRKILDEAMAGDNIGALLRGIQRDEIQRGQVLAKPGSVTPHKKFVGQVYVLKKEEGGRHTPFFNGYRPQFYFRTTDVTGSI-----NLPEGVEMVMPGDHIDMAVELITPVAMHENLRFAIREGGRTVGSGVVTTISE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBK (Elongation factor Tu OS=Clostridium botulinum (strain Okra / Type B1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.242e-50
Identity = 96/143 (67.13%), Postives = 115/143 (80.42%), Query Frame = 1
Query:   13 TGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TG+EMF+K LDEAMAGDN+G LLRG+Q+ +IQRG VLAKPG++TPH KF+  VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD I M VELI PVA  + +RFAIREGG+TVG+GV+ +I E
Sbjct:  260 TGIEMFRKILDEAMAGDNIGALLRGIQRDEIQRGQVLAKPGSVTPHKKFVGQVYVLKKEEGGRHTPFFNGYRPQFYFRTTDVTGSI-----NLPEGVEMVMPGDHIDMAVELITPVAMHENLRFAIREGGRTVGSGVVTTISE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBH (Elongation factor Tu OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.242e-50
Identity = 96/143 (67.13%), Postives = 115/143 (80.42%), Query Frame = 1
Query:   13 TGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TG+EMF+K LDEAMAGDN+G LLRG+Q+ +IQRG VLAKPG++TPH KF+  VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD I M VELI PVA  + +RFAIREGG+TVG+GV+ +I E
Sbjct:  260 TGIEMFRKILDEAMAGDNIGALLRGIQRDEIQRGQVLAKPGSVTPHKKFVGQVYVLKKEEGGRHTPFFNGYRPQFYFRTTDVTGSI-----NLPEGVEMVMPGDHIDMAVELITPVAMHENLRFAIREGGRTVGSGVVTTISE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CLOB1 (Elongation factor Tu OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.242e-50
Identity = 96/143 (67.13%), Postives = 115/143 (80.42%), Query Frame = 1
Query:   13 TGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TG+EMF+K LDEAMAGDN+G LLRG+Q+ +IQRG VLAKPG++TPH KF+  VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD I M VELI PVA  + +RFAIREGG+TVG+GV+ +I E
Sbjct:  260 TGIEMFRKILDEAMAGDNIGALLRGIQRDEIQRGQVLAKPGSVTPHKKFVGQVYVLKKEEGGRHTPFFNGYRPQFYFRTTDVTGSI-----NLPEGVEMVMPGDHIDMAVELITPVAMHENLRFAIREGGRTVGSGVVTTISE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CHLPD (Elongation factor Tu OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tuf PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.242e-50
Identity = 96/144 (66.67%), Postives = 115/144 (79.86%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMFQK LDE  AGDN GLLLRGV K +++RGMV+AKPGTI PHTKF A VY+L+KEEGGRH+PFF GYRPQFY RTTDVTG V+       E  +MVMPGD + + VELI+P+A ++ +RFAIREGG+TVGAG +  IIE
Sbjct:  255 VTGIEMFQKLLDEGQAGDNAGLLLRGVDKTELERGMVIAKPGTIKPHTKFKAEVYILRKEEGGRHTPFFNGYRPQFYFRTTDVTGSVT-----LPEGVEMVMPGDNLSVDVELIVPIAMDENLRFAIREGGRTVGAGSVTKIIE 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BAUCH (Elongation factor Tu OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=tuf PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.242e-50
Identity = 93/145 (64.14%), Postives = 117/145 (80.69%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LDE  AG+N+G+LLRGV++ D++RG VLAKPG+I PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +   + +MVMPGD IKM+V LI P+A +QG+RFAIREGG+TVGAG++  IIE
Sbjct:  255 TCTGVEMFRKLLDEGRAGENIGVLLRGVKRDDVERGQVLAKPGSIKPHTKFASEVYILNKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPIDVEMVMPGDNIKMIVNLIAPIAMDQGLRFAIREGGRTVGAGIVTDIIE 394          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_NITOC (Elongation factor Tu OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.234e-50
Identity = 94/143 (65.73%), Postives = 114/143 (79.72%), Query Frame = 1
Query:   13 TGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAKP +ITPHTKF A VYVL K+EGGRH+PFF GYRPQFY RTTDVTG +     D  +  +MVMPGD I+M V LI P+A E+G+RFA+REGG+TVGAGV+  +IE
Sbjct:  259 TGVEMFRKLLDEGRAGDNVGVLLRGTKREDVERGQVLAKPKSITPHTKFYAEVYVLSKDEGGRHTPFFTGYRPQFYFRTTDVTGAI-----DLPDGVEMVMPGDNIQMTVSLIAPIAMEEGLRFAVREGGRTVGAGVVSKVIE 396          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_METI4 (Elongation factor Tu OS=Methylacidiphilum infernorum (isolate V4) GN=tuf PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.234e-50
Identity = 99/144 (68.75%), Postives = 116/144 (80.56%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VT +EMF+KTLD A AGDNVGLLLRG++K D++RG V+AKPGTITPH KF A VYVLKKEEGGRH+ FF GYRPQF+ RTTDVTG V+       E  +MVMPGD ++ +VELI P+A E+ MRFAIREGGKTVGAGV+  IIE
Sbjct:  256 VTDIEMFRKTLDTAEAGDNVGLLLRGIKKDDVERGQVVAKPGTITPHHKFNAQVYVLKKEEGGRHTAFFNGYRPQFFFRTTDVTGTVT-----LKEGVEMVMPGDNVEFMVELISPIAMEKSMRFAIREGGKTVGAGVVTEIIE 394          
The following BLAST results are available for this feature:
BLAST of CK739762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_VIBPA3.242e-5066.90Elongation factor Tu OS=Vibrio parahaemolyticus GN... [more]
EFTU_PROVI3.242e-5068.31Elongation factor Tu OS=Prosthecochloris vibriofor... [more]
EFTU_CLOBL3.242e-5067.13Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBK3.242e-5067.13Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBH3.242e-5067.13Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOB13.242e-5067.13Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CHLPD3.242e-5066.67Elongation factor Tu OS=Chlorobium phaeobacteroide... [more]
EFTU_BAUCH3.242e-5064.14Elongation factor Tu OS=Baumannia cicadellinicola ... [more]
EFTU_NITOC4.234e-5065.73Elongation factor Tu OS=Nitrosococcus oceani (stra... [more]
EFTU_METI44.234e-5068.75Elongation factor Tu OS=Methylacidiphilum infernor... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6152 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739762 ID=CK739762; Name=CK739762; organism=Citrus sinensis; type=EST; length=545bp
AATTTCACTGTAACTGGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGC
AATGGCTGGGGATAATGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTG
ATATTCAGAGAGGGATGGTGTTGGCCAAGCCCGGAACAATTACTCCCCAT
ACTAAGTTCCTTGCCATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAG
GCACTCACCTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCA
CTGATGTGACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAG
TCCAAGATGGTTATGCCTGGTGACCGTATCAAGATGGTTGTGGAGCTTAT
TATGCCAGTGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAG
GAAAGACTGTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTAC
TAGGAACTTTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTT
AAACTTCATATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCT
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