CK739762

Overview
NameCK739762
Unique NameCK739762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_FERNB (Elongation factor Tu OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=tuf PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.234e-50
Identity = 95/144 (65.97%), Postives = 115/144 (79.86%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            +T VEMF+K LDEAMAGDNVG LLRGV K +++RG V+AKPG+ITPH KF A +YVLKKEEGGRH+PF  GY+PQFY+RT DVTG +     D     +MVMPGD ++M +ELI PVA E+GMRFA+REGG+TVGAGV+  IIE
Sbjct:  261 ITSVEMFRKELDEAMAGDNVGCLLRGVDKDEVERGQVIAKPGSITPHKKFKANIYVLKKEEGGRHTPFTKGYKPQFYIRTADVTGEIV----DLPAGVEMVMPGDNVEMTIELIYPVAIEKGMRFAVREGGRTVGAGVVSEIIE 400          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_ARCB4 (Elongation factor Tu OS=Arcobacter butzleri (strain RM4018) GN=tuf PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.234e-50
Identity = 92/144 (63.89%), Postives = 116/144 (80.56%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            TVTGVEMF+K +D+  AGDN G+LLRG++K D++RG VL KPGTITPHTKF   VY+L KEEGGRH+PFF+GYRPQFY+RTTDVTG  +       E ++MVMPGD ++M VEL+ P+A ++G +FAIREGG+TVGAGV+  II
Sbjct:  263 TVTGVEMFRKEMDQGQAGDNCGILLRGIKKEDVERGQVLVKPGTITPHTKFRCEVYILSKEEGGRHTPFFSGYRPQFYVRTTDVTGSCT-----LPEGTEMVMPGDNVEMTVELVAPIALDKGTKFAIREGGRTVGAGVVAEII 401          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_AERS4 (Elongation factor Tu OS=Aeromonas salmonicida (strain A449) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.234e-50
Identity = 96/144 (66.67%), Postives = 115/144 (79.86%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            T TGVEMF+K LDE  AG+N+G LLRGV++ D++RG VLAKPG+I PHTKF + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+ S+I
Sbjct:  255 TCTGVEMFRKLLDEGRAGENIGALLRGVKREDVERGQVLAKPGSIKPHTKFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIAPIAMDDGLRFAIREGGRTVGAGVVASVI 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_AERHH (Elongation factor Tu OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.234e-50
Identity = 96/144 (66.67%), Postives = 114/144 (79.17%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            T TGVEMF+K LDE  AG+N+G LLRGV++ D++RG VLAKPGTI PHTKF + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  255 TCTGVEMFRKLLDEGRAGENIGALLRGVKREDVERGQVLAKPGTIKPHTKFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIAPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_SYNAS (Elongation factor Tu OS=Syntrophus aciditrophicus (strain SB) GN=tuf PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.530e-50
Identity = 96/143 (67.13%), Postives = 118/143 (82.52%), Query Frame = 1
Query:   13 TGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TGVEMF+KTLDE  AGD+VGLLLRG+++ D++RG V+AKPG+ITPHTKF+A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG V+ +     E  +MVMPGD ++M V LI P+A E+ +RFAIREGG+TVGAGV+  +IE
Sbjct:  260 TGVEMFRKTLDEGRAGDDVGLLLRGIKREDVERGQVVAKPGSITPHTKFMAQVYVLTKEEGGRHTPFFTGYRPQFYFRTTDVTG-VAKLA----EGVEMVMPGDNVEMEVTLITPIAMEEQLRFAIREGGRTVGAGVVSKVIE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_HAEDU (Elongation factor Tu OS=Haemophilus ducreyi GN=tufA PE=3 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 5.530e-50
Identity = 97/145 (66.90%), Postives = 115/145 (79.31%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE  AG+NVG LLRG ++ +I+RG VLAKPGTITPHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A ++G+RFAIREGG+TVGAGV+  II+
Sbjct:  255 TVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERGQVLAKPGTITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDEGLRFAIREGGRTVGAGVVAKIIK 394          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CLOB8 (Elongation factor Tu OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.530e-50
Identity = 94/144 (65.28%), Postives = 115/144 (79.86%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMF+K LDEA AGDN+G LLRGVQ+ DI+RG VL+KP ++ PHTKF+  VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +        +  +MVMPGD I M VELI P+A ++G+RFAIREGG+TVG+GV+  I+E
Sbjct:  259 VTGIEMFRKLLDEAQAGDNIGALLRGVQRTDIERGQVLSKPNSVHPHTKFVGQVYVLKKEEGGRHTPFFDGYRPQFYFRTTDVTGSIK-----LPDGMEMVMPGDHIDMNVELITPIAMDEGLRFAIREGGRTVGSGVVTKIVE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CHLT3 (Elongation factor Tu OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tuf PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.530e-50
Identity = 95/144 (65.97%), Postives = 116/144 (80.56%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMF+K LD+  AGDN GLLLRGV K +++RGMV+AKPG+ITPHTKF A VY+LKKEEGGRH+PFF GYRPQFY RTTDVTG V     +  +  +MVMPGD + +  ELI P+A ++G+RFAIREGG+TVGAG + SIIE
Sbjct:  255 VTGIEMFRKLLDQGEAGDNAGLLLRGVNKDELERGMVIAKPGSITPHTKFKAEVYILKKEEGGRHTPFFNGYRPQFYFRTTDVTGSV-----NLPDGVEMVMPGDNLSIEAELIAPIAMDEGLRFAIREGGRTVGAGTVTSIIE 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CHLCH (Elongation factor Tu OS=Chlorobium chlorochromatii (strain CaD3) GN=tuf PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.530e-50
Identity = 96/144 (66.67%), Postives = 114/144 (79.17%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMFQK LDE  AGDN GLLLRGV K +++RGMV+AKPGTI PHTKF A VY+LKKEEGGRH+PFF GYRPQFY RTTDVTG V+       E  +MVMPGD + + VEL+ P+A ++G+RFAIREGG+TVGAG +  I E
Sbjct:  255 VTGIEMFQKLLDEGQAGDNAGLLLRGVDKTELERGMVIAKPGTIKPHTKFKAEVYILKKEEGGRHTPFFNGYRPQFYFRTTDVTGSVT-----LPEGVEMVMPGDNLAIEVELLAPIAMDEGLRFAIREGGRTVGAGSVTKINE 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BACSK (Elongation factor Tu OS=Bacillus clausii (strain KSM-K16) GN=tuf PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.530e-50
Identity = 98/145 (67.59%), Postives = 115/145 (79.31%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LD A AGDN+G LLRGV + +IQRG VLAKPGTITPHTKF A VYVL K+EGGRH+PFF+ YRPQFY RTTDVTG V        E ++MVMPGD  +M VELI P+A E+G RF+IREGG+TVG+GV+ +I E
Sbjct:  257 TVTGVEMFRKLLDYAEAGDNIGALLRGVSREEIQRGQVLAKPGTITPHTKFTAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNTEMTVELIAPIAIEEGTRFSIREGGRTVGSGVVSTITE 396          
The following BLAST results are available for this feature:
BLAST of CK739762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_FERNB4.234e-5065.97Elongation factor Tu OS=Fervidobacterium nodosum (... [more]
EFTU_ARCB44.234e-5063.89Elongation factor Tu OS=Arcobacter butzleri (strai... [more]
EFTU_AERS44.234e-5066.67Elongation factor Tu OS=Aeromonas salmonicida (str... [more]
EFTU_AERHH4.234e-5066.67Elongation factor Tu OS=Aeromonas hydrophila subsp... [more]
EFTU_SYNAS5.530e-5067.13Elongation factor Tu OS=Syntrophus aciditrophicus ... [more]
EFTU_HAEDU5.530e-5066.90Elongation factor Tu OS=Haemophilus ducreyi GN=tuf... [more]
EFTU_CLOB85.530e-5065.28Elongation factor Tu OS=Clostridium beijerinckii (... [more]
EFTU_CHLT35.530e-5065.97Elongation factor Tu OS=Chloroherpeton thalassium ... [more]
EFTU_CHLCH5.530e-5066.67Elongation factor Tu OS=Chlorobium chlorochromatii... [more]
EFTU_BACSK5.530e-5067.59Elongation factor Tu OS=Bacillus clausii (strain K... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6152 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739762 ID=CK739762; Name=CK739762; organism=Citrus sinensis; type=EST; length=545bp
AATTTCACTGTAACTGGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGC
AATGGCTGGGGATAATGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTG
ATATTCAGAGAGGGATGGTGTTGGCCAAGCCCGGAACAATTACTCCCCAT
ACTAAGTTCCTTGCCATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAG
GCACTCACCTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCA
CTGATGTGACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAG
TCCAAGATGGTTATGCCTGGTGACCGTATCAAGATGGTTGTGGAGCTTAT
TATGCCAGTGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAG
GAAAGACTGTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTAC
TAGGAACTTTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTT
AAACTTCATATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCT
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